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AMDSBA5_32

Alias: AMDSBA5_C31

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_32_1
unknown

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2..121
-----------------
DNA (120bp)
protein (40aa)
2..121 + ( gc_cont=0.392)
AMDSBA5_32_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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329..571
-----------------
DNA (243bp)
protein (81aa)
MurE/MurF N-terminal domain (db=superfamily db_id=SSF63418 from=12 to=59 evalue=1.2e-13)
(db=HMMPfam db_id=PF01225 from=18 to=59 evalue=3.2e-12 interpro_id=IPR000713 interpro_description=Mur ligase, N-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
no description (db=Gene3D db_id=G3DSA:3.40.1390.10 from=13 to=59 evalue=2.3e-11)
murE; UDP-N-acetylmuramyl tripeptide synthetase
AMDSBA5_32_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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513..1376
-----------------
DNA (864bp)
protein (288aa)
murE; UDP-N-acetylmuramyl tripeptide synthetase
UDP-N-acetylmuramyl-tripeptide synthetase 2 n=1 Tax=Oceanobacillus iheyensis HTE831 RepID=MURE2_OCEIH (db=UNIREF evalue=3.6e-24 bit_score=117.9 identity=32.3 coverage=78.81944444444444)
seg (db=Seg db_id=seg from=217 to=225)
MurD-like peptide ligases, catalytic domain (db=superfamily db_id=SSF53623 from=29 to=191 evalue=9.3e-50 interpro_id=IPR013221 interpro_description=Mur ligase, central GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
AMDSBA5_32_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1322..1795
-----------------
DNA (474bp)
protein (158aa)
murE; UDP-N-acetylmuramyl tripeptide synthetase
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 n=3 Tax=Clostridium acetobutylicum RepID=MURE1_CLOAB (db=UNIREF evalue=2.4e-22 bit_score=110.9 identity=38.5 coverage=87.34177215189874)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=1 to=145 evalue=6.1e-50)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=1 to=145 evalue=6.1e-50)
AMDSBA5_32_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1776..2660
-----------------
DNA (885bp)
protein (295aa)
family 2 glycosyl transferase
family 2 glycosyl transferase
Glycosyl transferase family 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TYK3_9FIRM (db=UNIREF evalue=7.6e-86 bit_score=322.8 identity=53.6 coverage=97.6271186440678)
AMDSBA5_32_16S_1
unknown

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2819..4328
-----------------
DNA (1510bp)
AMDSBA5_32_6
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3970..4287
-----------------
DNA (318bp)
protein (106aa)
hypothetical protein
Putative uncharacterized protein (Fragment) n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SBJ4_9STRE (db=UNIREF evalue=9.6e-23 bit_score=111.7 identity=70.2 coverage=78.30188679245283)
AMDSBA5_32_7
unknown

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4344..4814
-----------------
DNA (471bp)
protein (157aa)
seg (db=Seg db_id=seg from=95 to=112)
seg (db=Seg db_id=seg from=32 to=43)
AMDSBA5_32_8
unknown

Not on your lists

5707..6243
-----------------
DNA (537bp)
protein (179aa)
seg (db=Seg db_id=seg from=73 to=89)
seg (db=Seg db_id=seg from=123 to=138)
seg (db=Seg db_id=seg from=141 to=162)
AMDSBA5_32_9
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6842..7393)
-----------------
DNA (552bp)
protein (184aa)
cell wall-associated hydrolase family protein
(db=HMMPfam db_id=PF10695 from=99 to=183 evalue=1.2e-47)
UPI00015E6A9A related cluster n=3 Tax=unknown RepID=UPI00015E6A9A
AMDSBA5_32_10
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

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7582..8880
-----------------
DNA (1299bp)
protein (433aa)
beta-lactamase domain-containing protein
Metallo-beta-lactamase superfamily hydrolase n=6 Tax=Lactobacillus RepID=C2HLJ4_LACAI (db=UNIREF evalue=2.1e-31 bit_score=142.5 identity=27.0 coverage=96.99769053117782)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=431 evalue=1.9e-27)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=87 to=296 evalue=1.8e-10)
AMDSBA5_32_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8939..9148)
-----------------
DNA (210bp)
protein (70aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=65)
seg (db=Seg db_id=seg from=58 to=61)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I627_SULAT
AMDSBA5_32_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9224..10555)
-----------------
DNA (1332bp)
protein (444aa)
NRAMP family metal ion transporter
NRAMP family metal ion transporter
Metal ion transporter, NRAMP family n=2 Tax=Sulfobacillus acidophilus RepID=G8TTA4_9FIRM (db=UNIREF evalue=2.3e-182 bit_score=644.0 identity=72.1 coverage=98.42342342342343)
seg (db=Seg db_id=seg from=308 to=329)
AMDSBA5_32_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10798..11262
-----------------
DNA (465bp)
protein (155aa)
ctsR; transcriptional repressor
Transcriptional repressor, CtsR n=2 Tax=Desulfosporosinus RepID=G6GC13_9FIRM (db=UNIREF evalue=1.1e-24 bit_score=118.6 identity=40.5 coverage=95.48387096774194)
seg (db=Seg db_id=seg from=60 to=67)
(db=HMMPfam db_id=PF05848 from=1 to=148 evalue=5.4e-49 interpro_id=IPR008463 interpro_description=Firmicute transcriptional repressor of class III stress genes)
AMDSBA5_32_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11265..11834
-----------------
DNA (570bp)
protein (190aa)
UvrB/UvrC protein
UvrB/UvrC protein n=1 Tax=Mahella australiensis 50-1 BON RepID=F3ZYQ7_MAHA5 (db=UNIREF evalue=1.3e-33 bit_score=148.7 identity=40.7 coverage=84.73684210526315)
coiled-coil (db=Coil db_id=coil from=158 to=179 evalue=NA)
(db=HMMPfam db_id=PF02151 from=144 to=178 evalue=1.7e-10 interpro_id=IPR001943 interpro_description=UvrB/UvrC protein GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
AMDSBA5_32_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11821..12867
-----------------
DNA (1047bp)
protein (349aa)
ATP:guanido phosphotransferase
ATP:guanido phosphotransferase
Probable arginine kinase F46H5.3 n=6 Tax=Caenorhabditis RepID=KARG1_CAEEL (db=UNIREF evalue=1.7e-15 bit_score=89.4 identity=26.1 coverage=67.0487106017192)
PHOSPHAGEN_KINASE (db=PatternScan db_id=PS00112 from=160 to=166 evalue=0.0 interpro_id=IPR022415 interpro_description=ATP:guanido phosphotransferase active site GO=Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
AMDSBA5_32_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12929..15388
-----------------
DNA (2460bp)
protein (820aa)
ATPase AAA-2 domain-containing protein
ATPase AAA-2 domain-containing protein
Chaperone protein ClpB 1 n=8 Tax=Streptomyces RepID=CLPB1_STRAW (db=UNIREF evalue=2.0e-107 bit_score=396.0 identity=41.4 coverage=70.1219512195122)
coiled-coil (db=Coil db_id=coil from=416 to=463 evalue=NA)
AMDSBA5_32_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15514..16080
-----------------
DNA (567bp)
protein (189aa)
sms; DNA repair protein RadA
DNA repair protein RadA n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I531_SULAT (db=UNIREF evalue=4.6e-60 bit_score=236.5 identity=63.5 coverage=97.88359788359789)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=135 to=159 evalue=8.5e-36 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=85 to=102 evalue=8.5e-36 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA5_32_18
unknown

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16159..16806
-----------------
DNA (648bp)
protein (216aa)
16159..16806 + ( gc_cont=0.488)
AMDSBA5_32_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16850..17542
-----------------
DNA (693bp)
protein (231aa)
sms; DNA repair protein RadA
DNA repair protein radA n=1 Tax=Eubacterium yurii subsp. margaretiae ATCC 43715 RepID=E0QLL7_9FIRM (db=UNIREF evalue=2.2e-48 bit_score=198.0 identity=45.8 coverage=86.14718614718615)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=65 to=223 evalue=1.0e-33 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=93 to=116 evalue=2.3e-23 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA5_32_20
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17738..18751
-----------------
DNA (1014bp)
protein (338aa)
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA n=1 Tax=Acidothermus cellulolyticus 11B RepID=DISA_ACIC1 (db=UNIREF evalue=1.1e-51 bit_score=209.5 identity=38.8 coverage=96.15384615384616)
seg (db=Seg db_id=seg from=35 to=50)
(db=HMMPfam db_id=PF02457 from=19 to=134 evalue=7.4e-30 interpro_id=IPR003390 interpro_description=DNA integrity scanning protein, DisA, N-terminal)
AMDSBA5_32_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18955..20052
-----------------
DNA (1098bp)
protein (366aa)
PilT protein domain-containing protein
PilT protein domain-containing protein
Uncharacterized PIN and TRAM-domain containing protein YacL n=21 Tax=Bacillus RepID=YACL_BACSU (db=UNIREF evalue=3.6e-93 bit_score=347.4 identity=54.3 coverage=96.44808743169399)
AMDSBA5_32_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20159..20857
-----------------
DNA (699bp)
protein (233aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Bifunctional enzyme IspD/IspF n=1 Tax=Agrobacterium vitis S4 RepID=ISPDF_AGRVS (db=UNIREF evalue=3.6e-22 bit_score=110.9 identity=38.6 coverage=95.70815450643777)
ISPD (db=PatternScan db_id=PS01295 from=103 to=110 evalue=0.0 interpro_id=IPR018294 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
ispD: 2-C-methyl-D-erythritol 4-phosphate cy (db=HMMTigr db_id=TIGR00453 from=4 to=227 evalue=3.2e-60 interpro_id=IPR001228 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
AMDSBA5_32_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20850..21329
-----------------
DNA (480bp)
protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=ISPF_ALKOO (db=UNIREF evalue=4.5e-32 bit_score=143.3 identity=48.1 coverage=95.625)
ispF: 2C-methyl-D-erythritol 2,4-cyclodiphos (db=HMMTigr db_id=TIGR00151 from=4 to=158 evalue=1.8e-65 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
IpsF-like (db=superfamily db_id=SSF69765 from=3 to=157 evalue=3.1e-57 interpro_id=IPR023423 interpro_description=IpsF domain)
AMDSBA5_32_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21312..21983)
-----------------
DNA (672bp)
protein (224aa)
amiA; N-acetylmuramoyl-L-alanine amidase
Putative N-acetylmuramoyl-L-alanine amidase n=1 Tax=Buchnera aphidicola str. Sg (Schizaphis graminum) RepID=AMIB_BUCAP (db=UNIREF evalue=1.7e-08 bit_score=65.5 identity=28.1 coverage=54.01785714285714)
seg (db=Seg db_id=seg from=65 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA5_32_25
unknown

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comp(22209..23396)
-----------------
DNA (1188bp)
protein (396aa)
seg (db=Seg db_id=seg from=10 to=20)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=5.0)
AMDSBA5_32_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23769..25184
-----------------
DNA (1416bp)
protein (472aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=SYC_AZOPC (db=UNIREF evalue=3.7e-74 bit_score=284.6 identity=33.9 coverage=96.1864406779661)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
AMDSBA5_32_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25123..25983
-----------------
DNA (861bp)
protein (287aa)
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z380_EUBE2 (db=UNIREF evalue=2.6e-22 bit_score=111.7 identity=29.1 coverage=82.57839721254355)
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=42 to=283 evalue=1.0e-66 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH family GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=89 to=285 evalue=2.6e-62)
AMDSBA5_32_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26172..26846
-----------------
DNA (675bp)
protein (225aa)
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=1.8e-82 bit_score=311.2 identity=76.5 coverage=90.22222222222223)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=176 to=203 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA5_32_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26892..29012)
-----------------
DNA (2121bp)
protein (707aa)
transglutaminase domain-containing protein
Putative uncharacterized protein PH0326 n=1 Tax=Pyrococcus horikoshii OT3 RepID=O58064_PYRHO (db=UNIREF evalue=5.8e-23 bit_score=115.2 identity=29.9 coverage=40.31117397454031)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
seg (db=Seg db_id=seg from=301 to=313)
Displaying items 1-30 of 32 in total

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