ggKbase home page

AMDSBA5_32

Alias: AMDSBA5_C31

Search features with annotation key words

Displaying items 1-30 of 32 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_32_1
unknown

Not on your lists

2..121
DNA (120bp) protein (40aa)
2..121 + ( gc_cont=0.392)
AMDSBA5_32_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

329..571
DNA (243bp) protein (81aa)
MurE/MurF N-terminal domain (db=superfamily db_id=SSF63418 from=12 to=59 evalue=1.2e-13)
(db=HMMPfam db_id=PF01225 from=18 to=59 evalue=3.2e-12 interpro_id=IPR000713 interpro_description=Mur ligase, N-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
no description (db=Gene3D db_id=G3DSA:3.40.1390.10 from=13 to=59 evalue=2.3e-11)
murE; UDP-N-acetylmuramyl tripeptide synthetase
AMDSBA5_32_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

513..1376
DNA (864bp) protein (288aa)
murE; UDP-N-acetylmuramyl tripeptide synthetase
UDP-N-acetylmuramyl-tripeptide synthetase 2 n=1 Tax=Oceanobacillus iheyensis HTE831 RepID=MURE2_OCEIH (db=UNIREF evalue=3.6e-24 bit_score=117.9 identity=32.3 coverage=78.81944444444444)
seg (db=Seg db_id=seg from=217 to=225)
MurD-like peptide ligases, catalytic domain (db=superfamily db_id=SSF53623 from=29 to=191 evalue=9.3e-50 interpro_id=IPR013221 interpro_description=Mur ligase, central GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
AMDSBA5_32_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1322..1795
DNA (474bp) protein (158aa)
murE; UDP-N-acetylmuramyl tripeptide synthetase
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 n=3 Tax=Clostridium acetobutylicum RepID=MURE1_CLOAB (db=UNIREF evalue=2.4e-22 bit_score=110.9 identity=38.5 coverage=87.34177215189874)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=1 to=145 evalue=6.1e-50)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=1 to=145 evalue=6.1e-50)
AMDSBA5_32_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1776..2660
DNA (885bp) protein (295aa)
family 2 glycosyl transferase
family 2 glycosyl transferase
Glycosyl transferase family 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TYK3_9FIRM (db=UNIREF evalue=7.6e-86 bit_score=322.8 identity=53.6 coverage=97.6271186440678)
AMDSBA5_32_16S_1
unknown

Not on your lists

2819..4328
DNA (1510bp)
AMDSBA5_32_6
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3970..4287
DNA (318bp) protein (106aa)
hypothetical protein
Putative uncharacterized protein (Fragment) n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SBJ4_9STRE (db=UNIREF evalue=9.6e-23 bit_score=111.7 identity=70.2 coverage=78.30188679245283)
Tax=BJP_IG2157_Clostridiales_52_13
AMDSBA5_32_7
unknown

Not on your lists

4344..4814
DNA (471bp) protein (157aa)
seg (db=Seg db_id=seg from=95 to=112)
seg (db=Seg db_id=seg from=32 to=43)
AMDSBA5_32_8
unknown

Not on your lists

5707..6243
DNA (537bp) protein (179aa)
seg (db=Seg db_id=seg from=73 to=89)
seg (db=Seg db_id=seg from=123 to=138)
seg (db=Seg db_id=seg from=141 to=162)
AMDSBA5_32_9
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6842..7393)
DNA (552bp) protein (184aa)
cell wall-associated hydrolase family protein
(db=HMMPfam db_id=PF10695 from=99 to=183 evalue=1.2e-47)
UPI00015E6A9A related cluster n=3 Tax=unknown RepID=UPI00015E6A9A
Cell wall-associated hydrolase family protein {ECO:0000313|EMBL:CDN41077.1}; TaxID=483908 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus s
AMDSBA5_32_10
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7582..8880
DNA (1299bp) protein (433aa)
beta-lactamase domain-containing protein
Metallo-beta-lactamase superfamily hydrolase n=6 Tax=Lactobacillus RepID=C2HLJ4_LACAI (db=UNIREF evalue=2.1e-31 bit_score=142.5 identity=27.0 coverage=96.99769053117782)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=431 evalue=1.9e-27)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=87 to=296 evalue=1.8e-10)
AMDSBA5_32_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8939..9148)
DNA (210bp) protein (70aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=65)
seg (db=Seg db_id=seg from=58 to=61)
Uncharacterized protein {ECO:0000313|EMBL:AEJ41065.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I627_SULAT
AMDSBA5_32_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9224..10555)
DNA (1332bp) protein (444aa)
NRAMP family metal ion transporter
NRAMP family metal ion transporter
Metal ion transporter, NRAMP family n=2 Tax=Sulfobacillus acidophilus RepID=G8TTA4_9FIRM (db=UNIREF evalue=2.3e-182 bit_score=644.0 identity=72.1 coverage=98.42342342342343)
seg (db=Seg db_id=seg from=308 to=329)
AMDSBA5_32_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10798..11262
DNA (465bp) protein (155aa)
ctsR; transcriptional repressor
Transcriptional repressor, CtsR n=2 Tax=Desulfosporosinus RepID=G6GC13_9FIRM (db=UNIREF evalue=1.1e-24 bit_score=118.6 identity=40.5 coverage=95.48387096774194)
seg (db=Seg db_id=seg from=60 to=67)
(db=HMMPfam db_id=PF05848 from=1 to=148 evalue=5.4e-49 interpro_id=IPR008463 interpro_description=Firmicute transcriptional repressor of class III stress genes)
AMDSBA5_32_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11265..11834
DNA (570bp) protein (190aa)
UvrB/UvrC protein
UvrB/UvrC protein n=1 Tax=Mahella australiensis 50-1 BON RepID=F3ZYQ7_MAHA5 (db=UNIREF evalue=1.3e-33 bit_score=148.7 identity=40.7 coverage=84.73684210526315)
coiled-coil (db=Coil db_id=coil from=158 to=179 evalue=NA)
(db=HMMPfam db_id=PF02151 from=144 to=178 evalue=1.7e-10 interpro_id=IPR001943 interpro_description=UvrB/UvrC protein GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
AMDSBA5_32_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11821..12867
DNA (1047bp) protein (349aa)
ATP:guanido phosphotransferase
ATP:guanido phosphotransferase
Probable arginine kinase F46H5.3 n=6 Tax=Caenorhabditis RepID=KARG1_CAEEL (db=UNIREF evalue=1.7e-15 bit_score=89.4 identity=26.1 coverage=67.0487106017192)
PHOSPHAGEN_KINASE (db=PatternScan db_id=PS00112 from=160 to=166 evalue=0.0 interpro_id=IPR022415 interpro_description=ATP:guanido phosphotransferase active site GO=Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
AMDSBA5_32_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12929..15388
DNA (2460bp) protein (820aa)
ATPase AAA-2 domain-containing protein
ATPase AAA-2 domain-containing protein
Chaperone protein ClpB 1 n=8 Tax=Streptomyces RepID=CLPB1_STRAW (db=UNIREF evalue=2.0e-107 bit_score=396.0 identity=41.4 coverage=70.1219512195122)
coiled-coil (db=Coil db_id=coil from=416 to=463 evalue=NA)
AMDSBA5_32_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15514..16080
DNA (567bp) protein (189aa)
sms; DNA repair protein RadA
DNA repair protein RadA n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I531_SULAT (db=UNIREF evalue=4.6e-60 bit_score=236.5 identity=63.5 coverage=97.88359788359789)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=135 to=159 evalue=8.5e-36 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=85 to=102 evalue=8.5e-36 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA5_32_18
unknown

Not on your lists

16159..16806
DNA (648bp) protein (216aa)
16159..16806 + ( gc_cont=0.488)
AMDSBA5_32_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16850..17542
DNA (693bp) protein (231aa)
sms; DNA repair protein RadA
DNA repair protein radA n=1 Tax=Eubacterium yurii subsp. margaretiae ATCC 43715 RepID=E0QLL7_9FIRM (db=UNIREF evalue=2.2e-48 bit_score=198.0 identity=45.8 coverage=86.14718614718615)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=65 to=223 evalue=1.0e-33 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=93 to=116 evalue=2.3e-23 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
AMDSBA5_32_20
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17738..18751
DNA (1014bp) protein (338aa)
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA n=1 Tax=Acidothermus cellulolyticus 11B RepID=DISA_ACIC1 (db=UNIREF evalue=1.1e-51 bit_score=209.5 identity=38.8 coverage=96.15384615384616)
seg (db=Seg db_id=seg from=35 to=50)
(db=HMMPfam db_id=PF02457 from=19 to=134 evalue=7.4e-30 interpro_id=IPR003390 interpro_description=DNA integrity scanning protein, DisA, N-terminal)
AMDSBA5_32_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18955..20052
DNA (1098bp) protein (366aa)
PilT protein domain-containing protein
PilT protein domain-containing protein
Uncharacterized PIN and TRAM-domain containing protein YacL n=21 Tax=Bacillus RepID=YACL_BACSU (db=UNIREF evalue=3.6e-93 bit_score=347.4 identity=54.3 coverage=96.44808743169399)
AMDSBA5_32_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20159..20857
DNA (699bp) protein (233aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Bifunctional enzyme IspD/IspF n=1 Tax=Agrobacterium vitis S4 RepID=ISPDF_AGRVS (db=UNIREF evalue=3.6e-22 bit_score=110.9 identity=38.6 coverage=95.70815450643777)
ISPD (db=PatternScan db_id=PS01295 from=103 to=110 evalue=0.0 interpro_id=IPR018294 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
ispD: 2-C-methyl-D-erythritol 4-phosphate cy (db=HMMTigr db_id=TIGR00453 from=4 to=227 evalue=3.2e-60 interpro_id=IPR001228 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthetic process (GO:0008299))
AMDSBA5_32_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20850..21329
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=ISPF_ALKOO (db=UNIREF evalue=4.5e-32 bit_score=143.3 identity=48.1 coverage=95.625)
ispF: 2C-methyl-D-erythritol 2,4-cyclodiphos (db=HMMTigr db_id=TIGR00151 from=4 to=158 evalue=1.8e-65 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
IpsF-like (db=superfamily db_id=SSF69765 from=3 to=157 evalue=3.1e-57 interpro_id=IPR023423 interpro_description=IpsF domain)
AMDSBA5_32_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21312..21983)
DNA (672bp) protein (224aa)
amiA; N-acetylmuramoyl-L-alanine amidase
Putative N-acetylmuramoyl-L-alanine amidase n=1 Tax=Buchnera aphidicola str. Sg (Schizaphis graminum) RepID=AMIB_BUCAP (db=UNIREF evalue=1.7e-08 bit_score=65.5 identity=28.1 coverage=54.01785714285714)
seg (db=Seg db_id=seg from=65 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA5_32_25
unknown

Not on your lists

comp(22209..23396)
DNA (1188bp) protein (396aa)
seg (db=Seg db_id=seg from=10 to=20)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=5.0)
AMDSBA5_32_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23769..25184
DNA (1416bp) protein (472aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=SYC_AZOPC (db=UNIREF evalue=3.7e-74 bit_score=284.6 identity=33.9 coverage=96.1864406779661)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
AMDSBA5_32_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25123..25983
DNA (861bp) protein (287aa)
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z380_EUBE2 (db=UNIREF evalue=2.6e-22 bit_score=111.7 identity=29.1 coverage=82.57839721254355)
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=42 to=283 evalue=1.0e-66 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH family GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=89 to=285 evalue=2.6e-62)
AMDSBA5_32_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26172..26846
DNA (675bp) protein (225aa)
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=1.8e-82 bit_score=311.2 identity=76.5 coverage=90.22222222222223)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=176 to=203 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA5_32_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26892..29012)
DNA (2121bp) protein (707aa)
transglutaminase domain-containing protein
Putative uncharacterized protein PH0326 n=1 Tax=Pyrococcus horikoshii OT3 RepID=O58064_PYRHO (db=UNIREF evalue=5.8e-23 bit_score=115.2 identity=29.9 coverage=40.31117397454031)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
seg (db=Seg db_id=seg from=301 to=313)
Displaying items 1-30 of 32 in total

View Taxonomy