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This organism can only be binned in the context of its binning project amd. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

AMDSBA5_39

Alias: AMDSBA5_C38

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_39_1
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1..240
-----------------
DNA (240bp)
protein (80aa)
1..240 + ( gc_cont=0.508)
Uncharacterized protein n=1 Tax=Bacillus subtilis XF-1 RepID=M4KYC9_BACIU
Uncharacterized protein {ECO:0000313|EMBL:AGE64691.1}; TaxID=1233100 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis XF-1.;"
AMDSBA5_39_2
unknown

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751..1407
-----------------
DNA (657bp)
protein (219aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA5_39_3
unknown

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comp(1412..1795)
-----------------
DNA (384bp)
protein (128aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
AMDSBA5_39_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1822..2688)
-----------------
DNA (867bp)
protein (289aa)
1,4-dihydroxy-2-naphthoate prenyltransferase (EC:2.5.1.74)
1,4-dihydroxy-2-naphthoate octaprenyltransferase n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VR71_9CORY (db=UNIREF evalue=2.3e-26 bit_score=125.2 identity=30.0 coverage=92.38754325259517)
seg (db=Seg db_id=seg from=274 to=287)
seg (db=Seg db_id=seg from=236 to=251)
AMDSBA5_39_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2732..4198)
-----------------
DNA (1467bp)
protein (489aa)
2-succinylbenzoyl-CoA synthetase (EC:6.2.1.26)
NRPS n=1 Tax=Streptomyces iakyrus RepID=H8W3W2_9ACTO (db=UNIREF evalue=1.2e-06 bit_score=60.5 identity=26.2 coverage=49.284253578732105)
seg (db=Seg db_id=seg from=38 to=49)
AMP_BINDING (db=PatternScan db_id=PS00455 from=147 to=158 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
AMDSBA5_39_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4202..5020)
-----------------
DNA (819bp)
protein (273aa)
naphthoate synthase (EC:4.1.3.36) rbh
naphthoate synthase (EC:4.1.3.36) rbh
Naphthoate synthase n=2 Tax=Cyanidiaceae RepID=Q85G05_CYAME (db=UNIREF evalue=1.1e-91 bit_score=342.0 identity=65.5 coverage=93.04029304029304)
AMDSBA5_39_7
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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comp(5026..5871)
-----------------
DNA (846bp)
protein (282aa)
alpha/beta hydrolase fold protein
Alpha/beta hydrolase superfamily protein (Fragment) n=1 Tax=Brevibacterium mcbrellneri ATCC 49030 RepID=D4YLB3_9MICO (db=UNIREF evalue=6.1e-08 bit_score=63.9 identity=33.1 coverage=39.361702127659576)
seg (db=Seg db_id=seg from=25 to=33)
menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclo (db=HMMTigr db_id=TIGR03695 from=27 to=276 evalue=8.4e-92 interpro_id=IPR022485 interpro_description=2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO=Biological Process: menaquinone biosynthetic process (GO:0009234), Molecular Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity (GO:0070205))
AMDSBA5_39_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5931..7628)
-----------------
DNA (1698bp)
protein (566aa)
menD; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Halomonas boliviensis LC1 RepID=G9E890_9GAMM (db=UNIREF evalue=3.9e-62 bit_score=245.0 identity=30.6 coverage=93.99293286219081)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=14 to=198 evalue=2.7e-37)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=376 to=549 evalue=6.4e-26)
AMDSBA5_39_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7628..8986)
-----------------
DNA (1359bp)
protein (453aa)
isochorismate synthase (EC:5.4.4.2)
putative p-aminobenzoate synthetase n=1 Tax=Synechococcus sp. CB0205 RepID=UPI00020015C8 (db=UNIREF evalue=9.8e-24 bit_score=117.1 identity=24.9 coverage=73.06843267108167)
isochor_syn: isochorismate synthase (db=HMMTigr db_id=TIGR00543 from=100 to=448 evalue=2.8e-98 interpro_id=IPR004561 interpro_description=Isochorismate synthase GO=Molecular Function: isochorismate synthase activity (GO:0008909), Biological Process: biosynthetic process (GO:0009058))
AMINOBENZOATE/ANTHRANILATE SYNTHASE (db=HMMPanther db_id=PTHR11236 from=118 to=449 evalue=4.4e-97)
AMDSBA5_39_10
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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9069..9908
-----------------
DNA (840bp)
protein (280aa)
Protein kinase-like (PK-like) (db=superfamily db_id=SSF56112 from=6 to=260 evalue=1.1e-20 interpro_id=IPR011009 interpro_description=Protein kinase-like domain GO=Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
(db=HMMPfam db_id=PF01636 from=33 to=238 evalue=7.1e-20 interpro_id=IPR002575 interpro_description=Aminoglycoside phosphotransferase)
no description (db=Gene3D db_id=G3DSA:3.90.1200.10 from=24 to=254 evalue=1.7e-09)
UPI00028A236C related cluster n=1 Tax=unknown RepID=UPI00028A236C
AMDSBA5_39_11
unknown

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10502..11038
-----------------
DNA (537bp)
protein (179aa)
ACT-like (db=superfamily db_id=SSF55021 from=1 to=77 evalue=1.5e-09)
Q8DR04_STRR6_Q8DR04; (db=BlastProDom db_id=PD002844 from=1 to=72 evalue=0.0007)
AMDSBA5_39_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10983..12017
-----------------
DNA (1035bp)
protein (345aa)
ilvC; ketol-acid reductoisomerase
ilvC; ketol-acid reductoisomerase
Ketol-acid reductoisomerase n=2 Tax=Haloquadratum walsbyi RepID=ILVC_HALWD (db=UNIREF evalue=2.0e-101 bit_score=374.8 identity=53.9 coverage=98.55072463768117)
AMDSBA5_39_13
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

12014..13543
-----------------
DNA (1530bp)
protein (510aa)
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase 1 n=3 Tax=Bacillus RepID=LEU11_BACP2 (db=UNIREF evalue=3.0e-114 bit_score=417.9 identity=45.7 coverage=96.47058823529412)
AMDSBA5_39_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13570..14652
-----------------
DNA (1083bp)
protein (361aa)
leuB; 3-isopropylmalate dehydrogenase
Homoisocitrate dehydrogenase n=1 Tax=Roseiflexus sp. RS-1 RepID=A5US63_ROSS1 (db=UNIREF evalue=2.7e-48 bit_score=198.4 identity=38.0 coverage=96.39889196675901)
seg (db=Seg db_id=seg from=245 to=266)
IDH_IMDH (db=PatternScan db_id=PS00470 from=239 to=258 evalue=0.0 interpro_id=IPR019818 interpro_description=Isocitrate/isopropylmalate dehydrogenase, conserved site GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_39_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14649..16316
-----------------
DNA (1668bp)
protein (556aa)
ilvB; acetolactate synthase large subunit
Acetolactate synthase n=1 Tax=Methanosaeta thermophila PT RepID=A0B5D8_METTP (db=UNIREF evalue=2.0e-140 bit_score=505.0 identity=48.8 coverage=98.7410071942446)
seg (db=Seg db_id=seg from=209 to=217)
AMDSBA5_39_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16359..17258
-----------------
DNA (900bp)
protein (300aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched chain amino acid aminotransferase apoenzyme n=1 Tax=Methanosaeta thermophila PT RepID=A0B8R0_METTP (db=UNIREF evalue=1.2e-86 bit_score=325.5 identity=56.0 coverage=97.0)
AMDSBA5_39_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17255..18082
-----------------
DNA (828bp)
protein (276aa)
prephenate dehydratase (EC:4.2.1.51)
Chorismate mutase/prephenate dehydratase n=1 Tax=Corallococcus coralloides DSM 2259 RepID=H8N090_CORCM (db=UNIREF evalue=3.6e-29 bit_score=134.4 identity=37.1 coverage=95.65217391304348)
PREPHENATE DEHYDRATASE (P PROTEIN) (db=HMMPanther db_id=PTHR21022 from=7 to=275 evalue=3.3e-62)
PREPHENATE_DEHYDR_2 (db=PatternScan db_id=PS00858 from=222 to=229 evalue=0.0 interpro_id=IPR018528 interpro_description=Prephenate dehydratase, conserved site GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
AMDSBA5_39_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18222..19289
-----------------
DNA (1068bp)
protein (356aa)
hydrogenase expression/formation protein HypE
hydrogenase expression/formation protein HypE
AIR synthase related protein domain protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QY39_9EURY (db=UNIREF evalue=9.6e-75 bit_score=286.2 identity=45.5 coverage=94.66292134831461)
[NiFe]-hydrogenase maturation factor, AIR synthase-related, HypE type (db=HMMPIR db_id=PIRSF005644 from=4 to=346 evalue=4.8e-65 interpro_id=IPR011854 interpro_description=Hydrogenase expression/formation protein HypE)
AMDSBA5_39_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19289..20080
-----------------
DNA (792bp)
protein (264aa)
hydroxymethylpyrimidine kinase (EC:2.7.4.7)
hydroxymethylpyrimidine kinase (EC:2.7.4.7)
Hydroxymethylpyrimidine kinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVV0_9FIRM (db=UNIREF evalue=1.7e-81 bit_score=308.1 identity=62.6 coverage=96.5909090909091)
AMDSBA5_39_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20077..20700
-----------------
DNA (624bp)
protein (208aa)
thiamine-phosphate diphosphorylase
Thiamine-phosphate synthase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVV1_9FIRM (db=UNIREF evalue=2.5e-51 bit_score=207.6 identity=51.7 coverage=98.07692307692307)
thiE: thiamine-phosphate pyrophosphorylase (db=HMMTigr db_id=TIGR00693 from=8 to=200 evalue=1.1e-65 interpro_id=IPR003733 interpro_description=Thiamine monophosphate synthase GO=Molecular Function: thiamine-phosphate diphosphorylase activity (GO:0004789), Biological Process: thiamine biosynthetic process (GO:0009228))
THIAMINE-PHOSPHATE PYROPHOSPHORYLASE (db=HMMPanther db_id=PTHR20857 from=2 to=201 evalue=4.2e-64)
AMDSBA5_39_21
unknown

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comp(21126..21236)
-----------------
DNA (111bp)
protein (37aa)
21126..21236 - ( gc_cont=0.450)
Displaying 21 items

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