Alias: AMDSBA5_C41
| name | lists | location/seqs | annotations | notes |
|---|---|---|---|---|
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AMDSBA5_42_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(3..1691)
----------------- DNA (1689bp) protein (563aa) |
(db=HMMPfam db_id=PF00990 from=499 to=563 evalue=1.0e-18 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=504 to=563 evalue=3.2e-18 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signal transduction (GO:0035556))
no description (db=Gene3D db_id=G3DSA:3.30.70.270 from=490 to=563 evalue=5.4e-17)
GAF domain-like (db=superfamily db_id=SSF55781 from=340 to=493 evalue=2.5e-14)
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AMDSBA5_42_2
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria
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Not on your lists |
1886..2482
----------------- DNA (597bp) protein (199aa) |
pab1703; ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein n=1 Tax=Caldilinea aerophila DSM 14535 = NBRC 104270 RepID=I0I6K8_CALAS (db=UNIREF evalue=5.6e-24 bit_score=116.7 identity=38.5 coverage=81.4070351758794)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=193 evalue=4.3e-83)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=130 to=144 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
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AMDSBA5_42_3
Methanoculleus marisnigri, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea
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Not on your lists |
2464..2781
----------------- DNA (318bp) protein (106aa) |
ABC transporter-related protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CT92_METMJ (db=UNIREF evalue=3.9e-08 bit_score=63.2 identity=40.0 coverage=94.33962264150944)
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AMDSBA5_42_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria
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Not on your lists |
2778..3821
----------------- DNA (1044bp) protein (348aa) |
ABC transporter
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YH12_9DELT (db=UNIREF evalue=1.7e-23 bit_score=115.9 identity=24.9 coverage=98.27586206896551)
seg (db=Seg db_id=seg from=324 to=336)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
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AMDSBA5_42_5
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria
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Not on your lists |
3814..4971
----------------- DNA (1158bp) protein (386aa) |
signal transduction histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=159 to=186 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
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AMDSBA5_42_6
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria
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Not on your lists |
4928..5536
----------------- DNA (609bp) protein (203aa) |
Response regulator receiver domain protein
Putative two-component system response regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGB4_9ACTN (db=UNIREF evalue=4.1e-38 bit_score=163.7 identity=40.5 coverage=99.01477832512316)
SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) (db=HMMPanther db_id=PTHR23283:SF47 from=3 to=124 evalue=1.9e-12)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=132 evalue=7.4e-34 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
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AMDSBA5_42_7
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria
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Not on your lists |
5634..6353
----------------- DNA (720bp) protein (240aa) |
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU54901.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium fer
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AMDSBA5_42_8
unknown
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Not on your lists |
comp(6848..7474)
----------------- DNA (627bp) protein (209aa) |
6848..7474 - ( gc_cont=0.467)
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AMDSBA5_42_9
Brachybacterium muris, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
8217..8951
----------------- DNA (735bp) protein (245aa) |
mtrA; two-component response regulator MtrA
Transcriptional regulatory protein yxdJ n=21 Tax=Bacillus RepID=YXDJ_BACSU (db=UNIREF evalue=2.5e-18 bit_score=98.2 identity=29.2 coverage=90.20408163265307)
CheY-like (db=superfamily db_id=SSF52172 from=4 to=192 evalue=1.4e-27 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=126 to=229 evalue=6.2e-20 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
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AMDSBA5_42_10
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
8948..10165
----------------- DNA (1218bp) protein (406aa) |
seg (db=Seg db_id=seg from=20 to=33)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=241 to=402 evalue=1.8e-06 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=250 to=387 evalue=4.3e-11 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signal transduction (GO:0035556))
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AMDSBA5_42_11
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
10370..12043
----------------- DNA (1674bp) protein (558aa) |
sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS domain-containing
Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTS1_9AQUI (db=UNIREF evalue=1.1e-56 bit_score=226.9 identity=33.6 coverage=74.19354838709677)
seg (db=Seg db_id=seg from=154 to=165)
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AMDSBA5_42_12
unknown
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Not on your lists |
12075..12272
----------------- DNA (198bp) protein (66aa) |
12075..12272 + ( gc_cont=0.449)
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AMDSBA5_42_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
12326..14131
----------------- DNA (1806bp) protein (602aa) |
seg (db=Seg db_id=seg from=254 to=263)
(db=HMMPfam db_id=PF03961 from=150 to=368 evalue=4.5e-32 interpro_id=IPR005646 interpro_description=Protein of unknown function DUF342)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ40504.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
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AMDSBA5_42_14
Pontibacillus chungwhensis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
comp(14385..14816)
----------------- DNA (432bp) protein (144aa) |
OsmC family protein
seg (db=Seg db_id=seg from=34 to=48)
OsmC-like (db=superfamily db_id=SSF82784 from=1 to=140 evalue=2.4e-19 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
(db=HMMPfam db_id=PF02566 from=35 to=137 evalue=3.3e-15 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
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AMDSBA5_42_15
Lysinibacillus odysseyi, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
15155..16099
----------------- DNA (945bp) protein (315aa) |
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=142 to=308 evalue=3.3e-28 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=151 to=306 evalue=2.3e-38 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signal transduction (GO:0035556))
no description (db=HMMSmart db_id=SM00267 from=135 to=307 evalue=2.4e-34 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
no description (db=Gene3D db_id=G3DSA:3.30.70.270 from=142 to=306 evalue=1.6e-33)
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AMDSBA5_42_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
16322..16867
----------------- DNA (546bp) protein (182aa) |
Acetyl-CoA synthetase-like (db=superfamily db_id=SSF56801 from=3 to=163 evalue=3.0e-34)
LONG-CHAIN-FATTY-ACID--COA LIGASE (db=HMMPanther db_id=PTHR11968:SF44 from=8 to=163 evalue=2.3e-31)
ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBER (db=HMMPanther db_id=PTHR11968 from=8 to=163 evalue=2.3e-31)
no description (db=Gene3D db_id=G3DSA:3.40.50.980 from=16 to=165 evalue=2.7e-28)
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AMDSBA5_42_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
16824..17405
----------------- DNA (582bp) protein (194aa) |
caiC; long-chain-fatty-acid--CoA ligase
AMP_BINDING (db=PatternScan db_id=PS00455 from=8 to=19 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBER (db=HMMPanther db_id=PTHR11968 from=5 to=175 evalue=2.0e-47)
LONG-CHAIN-FATTY-ACID--COA LIGASE (db=HMMPanther db_id=PTHR11968:SF44 from=5 to=175 evalue=2.0e-47)
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AMDSBA5_42_18
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
17586..18782
----------------- DNA (1197bp) protein (399aa) |
transposase IS4 family protein
Transposase IS4 family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0Z6_9FIRM (db=UNIREF evalue=3.5e-142 bit_score=510.4 identity=63.8 coverage=96.49122807017544)
seg (db=Seg db_id=seg from=386 to=393)
(db=HMMPfam db_id=PF01609 from=186 to=384 evalue=1.8e-09 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
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AMDSBA5_42_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
18942..19616
----------------- DNA (675bp) protein (225aa) |
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
Medium-chain-fatty-acid--CoA ligase n=1 Tax=Vulcanisaeta moutnovskia 768-28 RepID=F0QXN3_VULM7 (db=UNIREF evalue=1.3e-21 bit_score=109.0 identity=32.5 coverage=85.77777777777777)
ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBER (db=HMMPanther db_id=PTHR11968 from=42 to=224 evalue=5.9e-82)
LONG-CHAIN-FATTY-ACID--COA LIGASE (db=HMMPanther db_id=PTHR11968:SF44 from=42 to=224 evalue=5.9e-82)
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AMDSBA5_42_20
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
19838..21466
----------------- DNA (1629bp) protein (543aa) |
fatty-acid--CoA ligase
AMP-dependent synthetase and ligase n=1 Tax=Vulcanisaeta distributa DSM 14429 RepID=E1QTP0_VULDI (db=UNIREF evalue=4.6e-36 bit_score=158.3 identity=32.6 coverage=60.957642725598525)
seg (db=Seg db_id=seg from=105 to=112)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
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AMDSBA5_42_21
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
21463..22056
----------------- DNA (594bp) protein (198aa) |
Transcriptional regulator, TetR family
Transcriptional regulator, TetR family n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L6H5_9BACI (db=UNIREF evalue=3.6e-31 bit_score=140.6 identity=35.7 coverage=92.42424242424242)
HTH_TETR_1 (db=PatternScan db_id=PS01081 from=25 to=56 evalue=0.0 interpro_id=IPR023772 interpro_description=DNA-binding HTH domain, TetR-type, conserved site)
no description (db=Gene3D db_id=G3DSA:1.10.357.10 from=52 to=192 evalue=1.1e-27 interpro_id=IPR015893 interpro_description=Tetracycline transcriptional regulator, TetR-like, C-terminal GO=Molecular Function: DNA binding (GO:0003677))
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AMDSBA5_42_22
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
22114..22884
----------------- DNA (771bp) protein (257aa) |
gluconate 5-dehydrogenase
gluconate 5-dehydrogenase
Short-chain dehydrogenase/reductase SDR n=7 Tax=Geobacillus RepID=B4BHX1_9BACI (db=UNIREF evalue=7.4e-85 bit_score=319.3 identity=61.9 coverage=99.22178988326849)
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AMDSBA5_42_23
R_NC10_66_22, NC10, Bacteria
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Not on your lists |
23042..24508
----------------- DNA (1467bp) protein (489aa) |
4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase
4-hydroxyphenylacetate 3-hydroxylase family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z8Z1_9GAMM (db=UNIREF evalue=1.0e-50 bit_score=206.8 identity=29.2 coverage=96.31901840490798)
seg (db=Seg db_id=seg from=434 to=445)
4-hydroxyphenylacetate 3-monooxygenase/4-hydroxyphenylacetate-3-hydroxylase (db=HMMPIR db_id=PIRSF000331 from=1 to=488 evalue=4.6e-83 interpro_id=IPR004925 interpro_description=HpaB/PvcC/4-BUDH)
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AMDSBA5_42_24
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
24868..25839
----------------- DNA (972bp) protein (324aa) |
periplasmic binding protein/LacI transcriptional regulator
LacI family transcriptional repressor n=5 Tax=Streptococcus dysgalactiae RepID=E7PZK0_STRDY (db=UNIREF evalue=1.1e-24 bit_score=119.8 identity=25.0 coverage=96.91358024691358)
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=4 to=22 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=59 to=322 evalue=2.0e-65)
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AMDSBA5_42_25
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
25858..26631
----------------- DNA (774bp) protein (258aa) |
ABC transporter related protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DPH1_9BACL (db=UNIREF evalue=5.0e-73 bit_score=280.0 identity=57.3 coverage=95.34883720930233)
ABC transporter-like protein
seg (db=Seg db_id=seg from=159 to=170)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=11 to=256 evalue=2.5e-81)
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AMDSBA5_42_26
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
26628..27641
----------------- DNA (1014bp) protein (338aa) |
monosaccharide-transporting ATPase (EC:3.6.3.17)
Inner-membrane translocator n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0U2_CATAD (db=UNIREF evalue=1.5e-08 bit_score=66.2 identity=26.0 coverage=64.79289940828401)
seg (db=Seg db_id=seg from=188 to=201)
seg (db=Seg db_id=seg from=112 to=132)
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AMDSBA5_42_27
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria
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Not on your lists |
27671..28663
----------------- DNA (993bp) protein (331aa) |
sugar ABC transporter substrate-binding protein
seg (db=Seg db_id=seg from=236 to=248)
seg (db=Seg db_id=seg from=5 to=36)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=41 to=320 evalue=4.4e-72)
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AMDSBA5_42_28
Cladophialophora immunda, Cladophialophora, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi
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Not on your lists |
28742..29959
----------------- DNA (1218bp) protein (406aa) |
anhydro-N-acetylmuramic acid kinase
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFJ0_9BACT (db=UNIREF evalue=2.5e-55 bit_score=221.9 identity=35.0 coverage=93.8423645320197)
(db=HMMPfam db_id=PF03702 from=4 to=392 evalue=5.1e-80 interpro_id=IPR005338 interpro_description=Anhydro-N-acetylmuramic acid kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: amino sugar metabolic process (GO:0006040), Biological Process: peptidoglycan turnover (GO:0009254), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=1 to=392 evalue=2.2e-10)
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AMDSBA5_42_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
29992..30939
----------------- DNA (948bp) protein (316aa) |
ribokinase
Fructokinase-2 n=8 Tax=Zea mays RepID=SCRK2_MAIZE (db=UNIREF evalue=4.6e-12 bit_score=77.8 identity=26.5 coverage=93.0379746835443)
PFKB_KINASES_1 (db=PatternScan db_id=PS00583 from=39 to=63 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
Ribokinase-like (db=superfamily db_id=SSF53613 from=2 to=301 evalue=6.7e-65)
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AMDSBA5_42_30
unknown
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Not on your lists |
31016..31288
----------------- DNA (273bp) protein (91aa) |
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