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AMDSBA5_59

Alias: AMDSBA5_C58

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_59_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(106..966)
DNA (861bp) protein (287aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG5_9FIRM (db=UNIREF evalue=5.3e-92 bit_score=343.2 identity=62.4 coverage=96.51567944250871)
seg (db=Seg db_id=seg from=84 to=96)
coiled-coil (db=Coil db_id=coil from=55 to=76 evalue=NA)
AMDSBA5_59_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(997..1746)
DNA (750bp) protein (250aa)
enoyl-ACP reductase (EC:1.3.1.9)
Hydroxybutyrate dehydrogenase n=1 Tax=Danaus plexippus RepID=G6D6V2_DANPL (db=UNIREF evalue=5.8e-10 bit_score=70.5 identity=24.7 coverage=96.39999999999999)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=1 to=243 evalue=3.8e-87)
ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (db=HMMPanther db_id=PTHR19410:SF12 from=1 to=243 evalue=3.8e-87)
AMDSBA5_59_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1868..2848)
DNA (981bp) protein (327aa)
glyoxylate reductase
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=gamma proteobacterium HIMB55 RepID=H3NUU0_9GAMM (db=UNIREF evalue=1.9e-29 bit_score=135.6 identity=34.5 coverage=81.9571865443425)
seg (db=Seg db_id=seg from=248 to=259)
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=225 to=241 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_59_4
unknown

Not on your lists

comp(3011..3202)
DNA (192bp) protein (64aa)
3011..3202 - ( gc_cont=0.500)
AMDSBA5_59_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4478..5506)
DNA (1029bp) protein (343aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWE5_9FIRM (db=UNIREF evalue=5.4e-91 bit_score=340.1 identity=44.6 coverage=98.25072886297376)
AMDSBA5_59_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5635..6612)
DNA (978bp) protein (326aa)
electron transfer flavoprotein alpha subunit apoprotein
electron transfer flavoprotein alpha subunit apoprotein
Electron transfer flavoprotein alpha subunit apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWE4_9FIRM (db=UNIREF evalue=6.2e-113 bit_score=412.9 identity=63.8 coverage=99.38650306748467)
AMDSBA5_59_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6627..7394)
DNA (768bp) protein (256aa)
electron transfer flavoprotein subunit beta
Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B5YMT1_THAPS (db=UNIREF evalue=1.4e-38 bit_score=165.6 identity=39.1 coverage=95.703125)
Electron transfer flavoprotein, beta subunit (db=HMMPIR db_id=PIRSF000090 from=1 to=254 evalue=1.9e-105 interpro_id=IPR012255 interpro_description=Electron transfer flavoprotein, beta subunit GO=Molecular Function: electron carrier activity (GO:0009055))
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=1 to=244 evalue=3.7e-92)
AMDSBA5_59_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7438..8883)
DNA (1446bp) protein (482aa)
selA; selenocysteine synthase rbh
selA; selenocysteine synthase rbh
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GC99_9FIRM (db=UNIREF evalue=2.3e-100 bit_score=371.7 identity=45.1 coverage=92.32365145228216)
seg (db=Seg db_id=seg from=160 to=179)
AMDSBA5_59_9
unknown

Not on your lists

comp(8883..9086)
DNA (204bp) protein (68aa)
8883..9086 - ( gc_cont=0.426)
AMDSBA5_59_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9167..10141)
DNA (975bp) protein (325aa)
hemB; delta-aminolevulinic acid dehydratase rbh
Delta-aminolevulinic acid dehydratase n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=HEM2_ARCFU (db=UNIREF evalue=1.1e-90 bit_score=339.0 identity=52.0 coverage=97.84615384615385)
D_ALA_DEHYDRATASE (db=PatternScan db_id=PS00169 from=240 to=252 evalue=0.0 interpro_id=IPR001731 interpro_description=Porphobilinogen synthase GO=Molecular Function: porphobilinogen synthase activity (GO:0004655), Biological Process: tetrapyrrole biosynthetic process (GO:0033014), Molecular Function: metal ion binding (GO:0046872))
AMDSBA5_59_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10149..11483)
DNA (1335bp) protein (445aa)
uroporphyrinogen III synthase HEM4
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E9RV01_9FIRM (db=UNIREF evalue=2.7e-18 bit_score=99.0 identity=28.3 coverage=55.28089887640449)
HemD-like (db=superfamily db_id=SSF69618 from=194 to=441 evalue=3.3e-51 interpro_id=IPR003754 interpro_description=Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO=Molecular Function: uroporphyrinogen-III synthase activity (GO:0004852), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
(db=HMMPfam db_id=PF02602 from=210 to=434 evalue=6.6e-51 interpro_id=IPR003754 interpro_description=Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO=Molecular Function: uroporphyrinogen-III synthase activity (GO:0004852), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
AMDSBA5_59_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11499..12464)
DNA (966bp) protein (322aa)
hemC; porphobilinogen deaminase
Porphobilinogen deaminase n=2 Tax=Methanotorris RepID=H1KWN0_9EURY (db=UNIREF evalue=1.5e-39 bit_score=169.1 identity=38.9 coverage=77.95031055900621)
seg (db=Seg db_id=seg from=33 to=41)
Porphobilinogen deaminase (db=HMMPIR db_id=PIRSF001438 from=23 to=321 evalue=5.9e-130 interpro_id=IPR000860 interpro_description=Tetrapyrrole biosynthesis, hydroxymethylbilane synthase GO=Molecular Function: hydroxymethylbilane synthase activity (GO:0004418), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
AMDSBA5_59_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12439..13245)
DNA (807bp) protein (269aa)
cytochrome c assembly protein
Cytochrome c assembly protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWD7_9FIRM (db=UNIREF evalue=5.0e-60 bit_score=236.9 identity=45.1 coverage=98.51301115241635)
seg (db=Seg db_id=seg from=246 to=268)
seg (db=Seg db_id=seg from=149 to=161)
AMDSBA5_59_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13260..14570)
DNA (1311bp) protein (437aa)
hemA; shikimate/quinate 5-dehydrogenase
Glutamyl-tRNA reductase 2 n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=HEM12_KORVE (db=UNIREF evalue=2.1e-63 bit_score=248.8 identity=34.4 coverage=94.05034324942791)
seg (db=Seg db_id=seg from=313 to=327)
GLUTR (db=PatternScan db_id=PS00747 from=96 to=119 evalue=0.0 interpro_id=IPR018214 interpro_description=Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site GO=Molecular Function: glutamyl-tRNA reductase activity (GO:0008883), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_59_15
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14891..15100)
DNA (210bp) protein (70aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=66 evalue=4.8e-07 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=11 to=49 evalue=1.4e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=10 to=64 evalue=8.6e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACV58102.1}; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus
AMDSBA5_59_16
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15260..15622
DNA (363bp) protein (121aa)
XRE family transcriptional regulator
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=3 to=116 evalue=1.1e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=6 to=62 evalue=3.2e-14 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=68 evalue=3.7e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBA5_59_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15660..16529)
DNA (870bp) protein (290aa)
sucD; succinyl-CoA synthetase subunit alpha
Malate--CoA ligase subunit alpha n=8 Tax=Alphaproteobacteria RepID=MTKB_METEA (db=UNIREF evalue=5.4e-68 bit_score=263.5 identity=46.6 coverage=99.3103448275862)
seg (db=Seg db_id=seg from=209 to=221)
SUCCINYL_COA_LIG_2 (db=PatternScan db_id=PS00399 from=236 to=249 evalue=0.0 interpro_id=IPR017440 interpro_description=ATP-citrate lyase/succinyl-CoA ligase, active site GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP citrate synthase activity (GO:0003878), Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775), Biological Process: metabolic process (GO:0008152))
AMDSBA5_59_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16530..17642)
DNA (1113bp) protein (371aa)
succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA synthetase (ADP-forming) beta subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLF8_MOOTA (db=UNIREF evalue=8.8e-47 bit_score=193.4 identity=32.6 coverage=92.99191374663073)
coiled-coil (db=Coil db_id=coil from=349 to=370 evalue=NA)
seg (db=Seg db_id=seg from=244 to=255)
AMDSBA5_59_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17639..18913)
DNA (1275bp) protein (425aa)
malate dehydrogenase (EC:1.1.1.40)
malate dehydrogenase (EC:1.1.1.40)
Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+) n=2 Tax=Haloferax RepID=I3R7B9_HALME (db=UNIREF evalue=1.4e-101 bit_score=375.6 identity=47.5 coverage=97.41176470588235)
seg (db=Seg db_id=seg from=371 to=383)
AMDSBA5_59_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18933..19865)
DNA (933bp) protein (311aa)
mdh; malate dehydrogenase
mdh; malate dehydrogenase
Malate dehydrogenase n=3 Tax=Bacteria RepID=C4W9S7_STAWA (db=UNIREF evalue=2.2e-83 bit_score=314.7 identity=50.6 coverage=99.03536977491962)
AMDSBA5_59_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19889..21106)
DNA (1218bp) protein (406aa)
icd; isocitrate dehydrogenase
Isocitrate dehydrogenase [NADP] n=6 Tax=Cyanobacteria RepID=IDH_NOSS1 (db=UNIREF evalue=1.9e-74 bit_score=285.4 identity=55.3 coverage=60.09852216748769)
IDH_IMDH (db=PatternScan db_id=PS00470 from=291 to=310 evalue=0.0 interpro_id=IPR019818 interpro_description=Isocitrate/isopropylmalate dehydrogenase, conserved site GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
prok_nadp_idh: isocitrate dehydrogenase (db=HMMTigr db_id=TIGR00183 from=3 to=405 evalue=4.5e-192 interpro_id=IPR004439 interpro_description=Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO=Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450), Biological Process: tricarboxylic acid cycle (GO:0006099), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_59_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21478..23277)
DNA (1800bp) protein (600aa)
small GTP-binding protein
small GTP-binding protein
Small GTP-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TVY3_9FIRM (db=UNIREF evalue=7.0e-195 bit_score=686.0 identity=58.5 coverage=99.16666666666667)
seg (db=Seg db_id=seg from=440 to=457)
AMDSBA5_59_23
unknown

Not on your lists

23380..23721
DNA (342bp) protein (114aa)
23380..23721 + ( gc_cont=0.491)
AMDSBA5_59_24
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

23787..25079
DNA (1293bp) protein (431aa)
MFS transporter
Major facilitator superfamily MFS_1 n=6 Tax=Thermoanaerobacter RepID=E1FCS7_9THEO (db=UNIREF evalue=2.1e-36 bit_score=159.1 identity=26.5 coverage=88.39907192575406)
seg (db=Seg db_id=seg from=302 to=315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=400 to=422)
AMDSBA5_59_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25114..27105)
DNA (1992bp) protein (664aa)
hypothetical protein
hypothetical protein
Iron-sulfur binding reductase n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=O28501_ARCFU (db=UNIREF evalue=2.3e-58 bit_score=232.6 identity=36.8 coverage=50.602409638554214)
seg (db=Seg db_id=seg from=6 to=17)
AMDSBA5_59_26
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27182..27415)
DNA (234bp) protein (78aa)
(db=HMMPfam db_id=PF04023 from=1 to=70 evalue=6.8e-10 interpro_id=IPR007167 interpro_description=Ferrous iron transporter, FeoA subunit GO=Molecular Function: iron ion binding (GO:0005506))
no description (db=HMMSmart db_id=SM00899 from=1 to=71 evalue=2.9e-09 interpro_id=IPR007167 interpro_description=Ferrous iron transporter, FeoA subunit GO=Molecular Function: iron ion binding (GO:0005506))
C-terminal domain of transcriptional repressors (db=superfamily db_id=SSF50037 from=27 to=71 evalue=8.1e-07 interpro_id=IPR008988 interpro_description=Transcriptional repressor, C-terminal)
FeoA family protein n=1 Tax=Caloramator australicus RC3 RepID=I7LKQ1_9CLOT
AMDSBA5_59_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27412..28170)
DNA (759bp) protein (253aa)
Sec-independent protein translocase TatC
Sec-independent protein translocase protein TatC 3 n=1 Tax=Sporosarcina newyorkensis 2681 RepID=F9DTP2_9BACL (db=UNIREF evalue=2.5e-37 bit_score=161.4 identity=33.2 coverage=91.30434782608695)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
AMDSBA5_59_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28201..28848)
DNA (648bp) protein (216aa)
Response regulator, NarL-family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV68_9GAMM (db=UNIREF evalue=6.3e-21 bit_score=106.7 identity=31.6 coverage=95.37037037037037)
seg (db=Seg db_id=seg from=31 to=43)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=166 to=193 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
CheY-like (db=superfamily db_id=SSF52172 from=2 to=186 evalue=9.6e-36 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
AMDSBA5_59_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28814..29725)
DNA (912bp) protein (304aa)
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SB28_9BACL (db=UNIREF evalue=5.4e-26 bit_score=124.0 identity=27.6 coverage=87.82894736842105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
seg (db=Seg db_id=seg from=286 to=301)
AMDSBA5_59_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29852..30646)
DNA (795bp) protein (265aa)
alpha/beta hydrolase fold protein
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=2 to=256 evalue=1.7e-37)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=14 to=256 evalue=4.1e-36)
HYDROLASE (db=HMMPanther db_id=PTHR10992:SF16 from=14 to=257 evalue=1.2e-25)
Displaying items 1-30 of 36 in total

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