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AMDSBA5_28_14

Organism: S._thermosulfido._IM5

near complete RP 51 / 55 MC: 14 BSCG 51 / 51 MC: 1 ASCG 0 / 38
Location: 16908..17627

Top 3 Functional Annotations

Value Algorithm Source
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=51 to=234 evalue=5.5e-22 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 5.50e-22
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=30 to=146 evalue=3.8e-13 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.80e-13
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=146 to=234 evalue=3.8e-10 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.80e-10

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Taxonomy

Syntrophaceticus schinkii → Syntrophaceticus → Thermoanaerobacterales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 720
ATGAACAATAACCTCGACAGGAGACACGCAAGGGTTTCTTCGCAGAGCCGGACGCCCTGGCGGTCTGATGATCCTCCGCAACAGGCCACAGAGGATCCGGACGAAGCAACATGGCACCAGTGGATAGCTCGTGCGCAAGCGGGCGATGAGGCGGTGTGGGAACAGATTTTTGCGGCGACCGATGCGTTAGTTCGCCGCATGCTCCGGGCCTATTATTGGCCGGGGCTCGACAGCGATGAGGACGATGGAGAACAAATTGCACGGACCGGCGTGTGGCAAGCCGTGATGCAGTATCAGCCCACCCGTCAGGTCCCGGTGCGGGCCTGGTTGCGATGGGTCATTCGTCGACGGCTCGCCGATGCAGTGCGCCAGGCCACTCGGTACAAACAGGTGTTTTACCGCCACGCCTTGCGGTTGGATAGTCCATGGGGGACAGGAGCAGAGACCAAATCACCAAACGTAACGGGGCACCAGCGATTACCTGCAGACGCCCTGGCTGATCCCCTGCAATGGGTAGAGCGCATCGAGCAACGCAACCACCTGTACGCAGGTCTGGAGGCATTAACGGCGTGGGAATGGCAGGTGCTTTGGGATGTGGCCGACGGGTTATCTTATAGCGAGATCGCCCGGATTCGCGGACGGCACCCGAAGGCTGTGGACAACGCCTTACAACGCGCCCGGCGCAAACTCCAGCAGCACTGGATGCCCGAAAAGGAGTAA
PROTEIN sequence
Length: 240
MNNNLDRRHARVSSQSRTPWRSDDPPQQATEDPDEATWHQWIARAQAGDEAVWEQIFAATDALVRRMLRAYYWPGLDSDEDDGEQIARTGVWQAVMQYQPTRQVPVRAWLRWVIRRRLADAVRQATRYKQVFYRHALRLDSPWGTGAETKSPNVTGHQRLPADALADPLQWVERIEQRNHLYAGLEALTAWEWQVLWDVADGLSYSEIARIRGRHPKAVDNALQRARRKLQQHWMPEKE*