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AMDSBA5_28

Alias: AMDSBA5_C27

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Displaying items 1-30 of 56 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_28_1
unknown

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2..835
DNA (834bp) protein (278aa)
2..835 + ( gc_cont=0.410)
AMDSBA5_28_2
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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884..2524
DNA (1641bp) protein (547aa)
family 5 extracellular solute-binding protein
Dipeptide ABC superfamily ATP binding cassette transporter, binding protein n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=D7WD23_9CORY (db=UNIREF evalue=3.1e-16 bit_score=92.4 identity=23.7 coverage=63.61974405850091)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=14 to=28)
AMDSBA5_28_3
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2537..3490
DNA (954bp) protein (318aa)
predicted ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
ABC-type transport system permease protein (Probable substrate dipeptides/oligopeptides) n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QVE8_9EURY (db=UNIREF evalue=1.9e-50 bit_score=205.3 identity=36.3 coverage=99.05660377358491)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
AMDSBA5_28_4
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3500..4399
DNA (900bp) protein (300aa)
oligopeptide ABC transporter permease
Putative oligopeptide ABC transporter n=2 Tax=Leptospirillum sp. Group II PF7_9BACT">RepID=A3EPF7_9BACT (db=UNIREF evalue=5.6e-44 bit_score=183.7 identity=39.0 coverage=82.33333333333334)
seg (db=Seg db_id=seg from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=263 to=285)
AMDSBA5_28_5
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4405..5415
DNA (1011bp) protein (337aa)
beta-lactamase
Beta-lactamase n=1 Tax=Spirochaeta smaragdinae DSM 11293 RepID=E1R132_SPISS (db=UNIREF evalue=1.1e-24 bit_score=119.8 identity=29.7 coverage=78.33827893175074)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=2 to=335 evalue=4.3e-60 interpro_id=IPR012338 interpro_description=Beta-lactamase/transpeptidase-like)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=1 to=331 evalue=7.9e-57 interpro_id=IPR012338 interpro_description=Beta-lactamase/transpeptidase-like)
AMDSBA5_28_6
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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5470..6195
DNA (726bp) protein (242aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Desulfovibrio desulfuricans ND132 RepID=F0JIC1_DESDE (db=UNIREF evalue=1.3e-14 bit_score=85.9 identity=27.2 coverage=76.44628099173553)
type I phosphodiesterase/nucleotide pyrophosphatase
seg (db=Seg db_id=seg from=106 to=115)
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP68295.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
AMDSBA5_28_7
RLO_PLX_64_10, Bacteria

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6267..7223
DNA (957bp) protein (319aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Frankia sp. CN3 RepID=G6HG03_9ACTO (db=UNIREF evalue=4.6e-28 bit_score=131.0 identity=34.2 coverage=84.63949843260188)
seg (db=Seg db_id=seg from=24 to=59)
Arabinanase/levansucrase/invertase (db=superfamily db_id=SSF75005 from=23 to=308 evalue=2.1e-08 interpro_id=IPR023296 interpro_description=Glycosyl hydrolase family 43, five-bladed beta-propellor domain)
AMDSBA5_28_8
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7225..9168
DNA (1944bp) protein (648aa)
hypothetical protein
N-acetylmuramic acid 6-phosphate etherase n=3 Tax=Edwardsiella RepID=MURQ_EDWI9 (db=UNIREF evalue=9.3e-52 bit_score=210.7 identity=40.8 coverage=43.05555555555556)
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=328 to=588 evalue=1.1e-70)
SIS domain (db=superfamily db_id=SSF53697 from=338 to=588 evalue=1.6e-57)
AMDSBA5_28_9
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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9153..10352
DNA (1200bp) protein (400aa)
ROK family protein
Xylose repressor n=3 Tax=Caldicellulosiruptor RepID=XYLR_ANATD (db=UNIREF evalue=2.9e-35 bit_score=155.2 identity=36.2 coverage=64.75)
seg (db=Seg db_id=seg from=12 to=25)
seg (db=Seg db_id=seg from=139 to=154)
AMDSBA5_28_10
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10349..11296
DNA (948bp) protein (316aa)
GCN5-like N-acetyltransferase
GCN5-related N-acetyltransferase n=1 Tax=Paenibacillus vortex V453 RepID=E5YSE9_9BACL (db=UNIREF evalue=7.1e-13 bit_score=80.5 identity=41.1 coverage=35.12658227848101)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=149 evalue=2.2e-14 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=123 to=300 evalue=1.3e-14 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
AMDSBA5_28_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11750..13984
DNA (2235bp) protein (745aa)
diguanylate cyclase and metal dependent phosphohydrolase rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Halomonas sp. GFAJ-1 RepID=H0J2V8_9GAMM (db=UNIREF evalue=3.7e-12 bit_score=79.3 identity=28.6 coverage=29.395973154362416)
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=159)
AMDSBA5_28_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14439..15032
DNA (594bp) protein (198aa)
hypothetical protein
Putative uncharacterized protein (Fragment) n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GUX4_9EURY (db=UNIREF evalue=2.3e-09 bit_score=68.2 identity=29.6 coverage=69.1919191919192)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
AMDSBA5_28_13
RIFOXYA1_FULL_Chromatiales_46_5_curated, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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15440..16918
DNA (1479bp) protein (493aa)
diguanylate cyclase
Response regulator n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SMG0_RHOPH (db=UNIREF evalue=1.1e-20 bit_score=107.1 identity=41.7 coverage=33.2657200811359)
transmembrane_regions (db=TMHMM db_id=tmhmm from=226 to=248)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
AMDSBA5_28_14
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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16908..17627
DNA (720bp) protein (240aa)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=51 to=234 evalue=5.5e-22 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=30 to=146 evalue=3.8e-13 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=146 to=234 evalue=3.8e-10 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct
(db=HMMPfam db_id=PF04542 from=62 to=127 evalue=3.1e-09 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBA5_28_15
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17717..18160)
DNA (444bp) protein (148aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7PVU3_CATAD
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACU71335.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;
AMDSBA5_28_16
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18897..19943
DNA (1047bp) protein (349aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus caldus SM-1 RepID=F9ZUA8_ACICS (db=UNIREF evalue=2.5e-51 bit_score=208.4 identity=38.2 coverage=91.40401146131805)
Purine and uridine phosphorylases (db=superfamily db_id=SSF53167 from=70 to=313 evalue=3.0e-06)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
AMDSBA5_28_17
GWB1_OP11_49_7, Gottesmanbacteria, Microgenomates, Bacteria

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comp(20395..20787)
DNA (393bp) protein (131aa)
20395..20787 - ( gc_cont=0.527)
Uncharacterized protein {ECO:0000313|EMBL:KKW11724.1}; TaxID=1618448 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWB1_49_7.;"
Transposase, OrfB family, putative
Transposase, OrfB family, putative n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WR94_METH6
AMDSBA5_28_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21436..21804)
DNA (369bp) protein (123aa)
(db=HMMPfam db_id=PF00563 from=7 to=101 evalue=4.7e-16 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
EAL domain-like (db=superfamily db_id=SSF141868 from=6 to=109 evalue=6.1e-16 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
EAL (db=ProfileScan db_id=PS50883 from=1 to=115 evalue=16.436 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
diguanylate phosphodiesterase
AMDSBA5_28_19
unknown

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comp(22041..22145)
DNA (105bp) protein (35aa)
22041..22145 - ( gc_cont=0.505)
AMDSBA5_28_20
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22468..22929
DNA (462bp) protein (154aa)
response regulator receiver
CheY-like (db=superfamily db_id=SSF52172 from=9 to=127 evalue=3.2e-32 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
no description (db=HMMSmart db_id=SM00448 from=12 to=124 evalue=2.8e-28 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=13 to=141 evalue=1.7e-26)
AMDSBA5_28_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22926..24734
DNA (1809bp) protein (603aa)
coiled-coil (db=Coil db_id=coil from=375 to=396 evalue=NA)
(db=HMMPfam db_id=PF03961 from=156 to=297 evalue=1.8e-14 interpro_id=IPR005646 interpro_description=Protein of unknown function DUF342)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ40504.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA5_28_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24786..24998
DNA (213bp) protein (71aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8U111_9FIRM (db=UNIREF evalue=4.0e-25 bit_score=119.0 identity=76.8 coverage=95.77464788732394)
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8U111_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW06556.1}; Flags: Precursor;; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillu
AMDSBA5_28_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25002..25697
DNA (696bp) protein (232aa)
putative signal transduction histidine kinase rbh
putative signal transduction histidine kinase rbh
Histidine kinase n=2 Tax=Sulfobacillus acidophilus RepID=F8IC01_SULAT (db=UNIREF evalue=7.1e-71 bit_score=272.7 identity=71.9 coverage=76.29310344827587)
coiled-coil (db=Coil db_id=coil from=68 to=89 evalue=NA)
AMDSBA5_28_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25694..27142
DNA (1449bp) protein (483aa)
putative metal dependent phosphohydrolase rbh
putative metal dependent phosphohydrolase rbh
Metal dependent phosphohydrolase n=2 Tax=Sulfobacillus acidophilus RepID=F8IC00_SULAT (db=UNIREF evalue=1.3e-191 bit_score=674.9 identity=66.9 coverage=99.58592132505176)
AMDSBA5_28_25
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27459..28244
DNA (786bp) protein (262aa)
Transposase, IS4 family protein n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLT9_9FIRM (db=UNIREF evalue=5.5e-11 bit_score=73.9 identity=35.2 coverage=45.038167938931295)
transposase, IS4 family protein (db=KEGG evalue=1.4e-09 bit_score=68.9 identity=31.7 coverage=51.908396946564885)
seg (db=Seg db_id=seg from=133 to=141)
AMDSBA5_28_26
unknown

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28267..28452
DNA (186bp) protein (62aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=60)
seg (db=Seg db_id=seg from=48 to=59)
AMDSBA5_28_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29980..30309)
DNA (330bp) protein (110aa)
HesB-like domain (db=superfamily db_id=SSF89360 from=4 to=96 evalue=1.4e-13 interpro_id=IPR000361 interpro_description=FeS cluster biogenesis)
HES-B (db=HMMPanther db_id=PTHR10072:SF26 from=1 to=107 evalue=8.1e-11)
HES-B (db=HMMPanther db_id=PTHR10072 from=1 to=107 evalue=8.1e-11)
(db=HMMPfam db_id=PF01521 from=6 to=96 evalue=1.7e-10 interpro_id=IPR000361 interpro_description=FeS cluster biogenesis)
AMDSBA5_28_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30306..30590)
DNA (285bp) protein (95aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX76_9FIRM (db=UNIREF evalue=7.5e-35 bit_score=151.8 identity=74.7 coverage=94.73684210526315)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=51 to=62 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=89 evalue=2.5e-18)
AMDSBA5_28_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30640..30960)
DNA (321bp) protein (107aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX75_9FIRM (db=UNIREF evalue=7.9e-33 bit_score=145.2 identity=78.5 coverage=72.89719626168224)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=12 to=23 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=44 to=55 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA5_28_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30971..32785)
DNA (1815bp) protein (605aa)
cyclic nucleotide-binding protein
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX74_9FIRM (db=UNIREF evalue=2.5e-277 bit_score=959.9 identity=72.1 coverage=99.3388429752066)
seg (db=Seg db_id=seg from=535 to=544)
Displaying items 1-30 of 56 in total

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