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AMDSBAU_12

Alias: SULFO_OTHER_12

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_12_1
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

176..1129
DNA (954bp) protein (318aa)
tyrosine recombinase XerC; K03733 integrase/recombinase XerC Tax=CG_Arma_01
integrase family protein
Tyrosine recombinase XerC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=E8RPA7_ASTEC (db=UNIREF evalue=4.2e-33 bit_score=147.9 identity=35.6 coverage=90.88050314465409)
(db=HMMPfam db_id=PF02899 from=7 to=94 evalue=1.5e-07 interpro_id=IPR004107 interpro_description=Integrase, SAM-like, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA integration (GO:0015074))
AMDSBAU_12_2
unknown

Not on your lists

1747..1923
DNA (177bp) protein (59aa)
1747..1923 + ( gc_cont=0.480)
AMDSBAU_12_3
GWA2_OD1_52_8b, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2619..3833)
DNA (1215bp) protein (405aa)
Chromosome segregation DNA-binding protein {ECO:0000313|EMBL:KKW31243.1}; TaxID=1618979 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWA2_52_8d.;"
Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1V6_9FIRM (db=UNIREF evalue=2.7e-21 bit_score=109.0 identity=27.1 coverage=60.49382716049383)
plasmid stablization protein ParB
seg (db=Seg db_id=seg from=117 to=139)
AMDSBAU_12_4
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3803..4612)
DNA (810bp) protein (270aa)
ParA-like protein {ECO:0000313|EMBL:AEP14254.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillu
ParA-like protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CIX7_9FIRM (db=UNIREF evalue=8.7e-40 bit_score=169.9 identity=39.7 coverage=94.07407407407408)
chromosome partitioning ATPase
seg (db=Seg db_id=seg from=77 to=88)
AMDSBAU_12_5
unknown

Not on your lists

comp(4605..4877)
DNA (273bp) protein (91aa)
(db=HMMPfam db_id=PF01381 from=21 to=51 evalue=1.6e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=19 to=72 evalue=2.2e-08 interpro_id=IPR009061 interpro_description=DNA binding domain, putative GO=Molecular Function: nucleotide binding (GO:0000166))
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=20 to=71 evalue=2.7e-14 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_12_6
unknown

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comp(5018..6202)
DNA (1185bp) protein (395aa)
coiled-coil (db=Coil db_id=coil from=286 to=311 evalue=NA)
seg (db=Seg db_id=seg from=285 to=296)
AMDSBAU_12_7
unknown

Not on your lists

6283..6582
DNA (300bp) protein (100aa)
6283..6582 + ( gc_cont=0.553)
AMDSBAU_12_8
unknown

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comp(6741..6941)
DNA (201bp) protein (67aa)
6741..6941 - ( gc_cont=0.483)
AMDSBAU_12_9
unknown

Not on your lists

6997..7593
DNA (597bp) protein (199aa)
(db=HMMPfam db_id=PF06114 from=60 to=173 evalue=5.8e-11 interpro_id=IPR010359 interpro_description=Protein of unknown function DUF955)
AMDSBAU_12_10
unknown

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comp(7595..7993)
DNA (399bp) protein (133aa)
seg (db=Seg db_id=seg from=74 to=80)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=6 to=99 evalue=2.2e-06 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_12_11
unknown

Not on your lists

9116..10312
DNA (1197bp) protein (399aa)
seg (db=Seg db_id=seg from=46 to=58)
AMDSBAU_12_12
unknown

Not on your lists

10407..11300
DNA (894bp) protein (298aa)
(db=HMMPfam db_id=PF06504 from=56 to=283 evalue=8.5e-13 interpro_id=IPR010522 interpro_description=Replication C)
AMDSBAU_12_13
unknown

Not on your lists

11929..12912
DNA (984bp) protein (328aa)
seg (db=Seg db_id=seg from=118 to=138)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=17 to=88 evalue=6.0e-07)
AMDSBAU_12_14
R_NC10_66_22, NC10, Bacteria

Not on your lists

12989..15166
DNA (2178bp) protein (726aa)
Helicase, RecD/TraA family (EC:3.1.11.5) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
exonuclease V subunit alpha
exonuclease V subunit alpha
Helicase, RecD/TraA family n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X0I1_DESRD
AMDSBAU_12_15
unknown

Not on your lists

15163..15348
DNA (186bp) protein (62aa)
15163..15348 + ( gc_cont=0.608)
AMDSBAU_12_16
GWA1_OD1_Jorgensenbacteria_54_12_curated, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

15428..16618
DNA (1191bp) protein (397aa)
primary replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=GWA1_OD1_Jorgensenbacteria_54_12_curated
replicative DNA helicase
Replicative DNA helicase n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WXC6_BACT2 (db=UNIREF evalue=3.6e-34 bit_score=151.8 identity=29.0 coverage=93.95465994962217)
seg (db=Seg db_id=seg from=79 to=98)
AMDSBAU_12_17
Providencia stuartii, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16701..17393
DNA (693bp) protein (231aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH95154.1}; TaxID=1157951 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia s
Uncharacterized protein n=5 Tax=Gammaproteobacteria RepID=I0DXT6_PROSM (db=UNIREF evalue=2.0e-37 bit_score=161.8 identity=43.5 coverage=86.58008658008657)
no description (db=HMMSmart db_id=SM00382 from=11 to=158 evalue=5.8e-05 interpro_id=IPR003593 interpro_description=ATPase, AAA+ type, core GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: nucleoside-triphosphatase activity (GO:0017111))
AMDSBAU_12_18
unknown

Not on your lists

17472..17882
DNA (411bp) protein (137aa)
17472..17882 + ( gc_cont=0.647)
AMDSBAU_12_19
unknown

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17903..18475
DNA (573bp) protein (191aa)
17903..18475 + ( gc_cont=0.625)
AMDSBAU_12_20
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18423..19445
DNA (1023bp) protein (341aa)
zinc finger CHC2-family protein
Zinc finger CHC2-family protein {ECO:0000313|EMBL:ACX51840.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" sou
Zinc finger CHC2-family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RC63_AMMDK (db=UNIREF evalue=2.6e-49 bit_score=201.8 identity=38.3 coverage=94.42815249266863)
seg (db=Seg db_id=seg from=93 to=101)
AMDSBAU_12_21
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19446..20864
DNA (1419bp) protein (473aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pse
Putative DNA helicase n=2 Tax=Pseudomonas RepID=F0E719_9PSED (db=UNIREF evalue=1.7e-75 bit_score=289.3 identity=38.7 coverage=97.67441860465115)
putative DNA helicase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=252 evalue=1.4e-19)
AMDSBAU_12_22
unknown

Not on your lists

20881..21201
DNA (321bp) protein (107aa)
20881..21201 + ( gc_cont=0.617)
AMDSBAU_12_23
unknown

Not on your lists

21289..21588
DNA (300bp) protein (100aa)
21289..21588 + ( gc_cont=0.583)
AMDSBAU_12_24
unknown

Not on your lists

21588..21683
DNA (96bp) protein (32aa)
21588..21683 + ( gc_cont=0.510)
AMDSBAU_12_25
unknown

Not on your lists

21732..22010
DNA (279bp) protein (93aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=19)
seg (db=Seg db_id=seg from=67 to=81)
AMDSBAU_12_26
unknown

Not on your lists

22057..23115
DNA (1059bp) protein (353aa)
seg (db=Seg db_id=seg from=99 to=111)
seg (db=Seg db_id=seg from=206 to=221)
seg (db=Seg db_id=seg from=305 to=317)
AMDSBAU_12_27
unknown

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23157..23312
DNA (156bp) protein (52aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBAU_12_28
unknown

Not on your lists

23381..23482
DNA (102bp) protein (34aa)
23381..23482 + ( gc_cont=0.431)
AMDSBAU_12_29
unknown

Not on your lists

23495..24001
DNA (507bp) protein (169aa)
(db=HMMPfam db_id=PF00437 from=1 to=41 evalue=0.00013 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=140 evalue=4.1e-05)
AMDSBAU_12_30
unknown

Not on your lists

24140..24427
DNA (288bp) protein (96aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=82)
Displaying items 1-30 of 46 in total

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