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AMDSBAU_16

Alias: SULFO_OTHER_16

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_16_1
unknown

Not on your lists

comp(217..414)
DNA (198bp) protein (66aa)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=3 to=64 evalue=1.2e-09 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=4 to=51 evalue=2.1e-06 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
(db=HMMPfam db_id=PF00589 from=9 to=50 evalue=6.0e-11 interpro_id=IPR002104 interpro_description=Integrase, catalytic GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBAU_16_2
unknown

Not on your lists

comp(572..898)
DNA (327bp) protein (109aa)
seg (db=Seg db_id=seg from=32 to=49)
AMDSBAU_16_3
unknown

Not on your lists

922..1725
DNA (804bp) protein (268aa)
922..1725 + ( gc_cont=0.443)
AMDSBAU_16_4
unknown

Not on your lists

1718..2287
DNA (570bp) protein (190aa)
1718..2287 + ( gc_cont=0.479)
AMDSBAU_16_5
unknown

Not on your lists

2284..2760
DNA (477bp) protein (159aa)
2284..2760 + ( gc_cont=0.480)
AMDSBAU_16_6
Geobacillus sp. Y412MC52, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2630..3328)
DNA (699bp) protein (233aa)
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADU95973.1}; TaxID=550542 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y412MC52).;"
Integrase family protein n=3 Tax=Geobacillus RepID=C9S247_GEOSY (db=UNIREF evalue=1.6e-34 bit_score=152.1 identity=49.4 coverage=68.6695278969957)
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=9 to=152 evalue=2.7e-22 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBAU_16_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3528..4715)
DNA (1188bp) protein (396aa)
MMPL domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AEW04217.1}; Flags: Precursor;; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillu
MMPL domain protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4L9_SULAT (db=UNIREF evalue=1.2e-18 bit_score=100.1 identity=28.2 coverage=81.06060606060606)
seg (db=Seg db_id=seg from=5 to=15)
AMDSBAU_16_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4688..6217)
DNA (1530bp) protein (510aa)
MMPL domain-containing protein
MMPL domain protein {ECO:0000313|EMBL:AEJ41458.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobaci
MMPL domain protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I9H3_SULAT (db=UNIREF evalue=4.1e-14 bit_score=85.5 identity=26.8 coverage=60.3921568627451)
transmembrane_regions (db=TMHMM db_id=tmhmm from=447 to=469)
AMDSBAU_16_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6229..7137)
DNA (909bp) protein (303aa)
3'-5' exonuclease
Putative 3'-5' exonuclease {ECO:0000313|EMBL:AEJ40941.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Su
3'-5' exonuclease, PolB n=2 Tax=Sulfobacillus acidophilus RepID=G8TU10_SULAD (db=UNIREF evalue=5.1e-65 bit_score=253.8 identity=65.0 coverage=64.68646864686468)
seg (db=Seg db_id=seg from=41 to=54)
AMDSBAU_16_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7178..7840)
DNA (663bp) protein (221aa)
phage repressor like transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AEW04603.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Phage repressor like transcriptional regulator, XRE family n=2 Tax=Sulfobacillus acidophilus RepID=G8TU12_SULAD (db=UNIREF evalue=3.6e-52 bit_score=210.7 identity=55.0 coverage=86.87782805429865)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=49 to=174 evalue=1.7e-19 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
AMDSBAU_16_11
unknown

Not on your lists

comp(7855..8808)
DNA (954bp) protein (318aa)
seg (db=Seg db_id=seg from=288 to=297)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=71 evalue=1.4e-05 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_16_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9013..10011
DNA (999bp) protein (333aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TU14_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEJ40935.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
(db=HMMPfam db_id=PF01381 from=4 to=58 evalue=1.6e-12 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBAU_16_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10110..10733
DNA (624bp) protein (208aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4T7_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ40934.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBAU_16_14
unknown

Not on your lists

10904..11620
DNA (717bp) protein (239aa)
coiled-coil (db=Coil db_id=coil from=40 to=61 evalue=NA)
AMDSBAU_16_15
unknown

Not on your lists

11646..11960
DNA (315bp) protein (105aa)
11646..11960 + ( gc_cont=0.603)
AMDSBAU_16_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11953..12537
DNA (585bp) protein (195aa)
type III restriction protein res subunit
Uncharacterized protein {ECO:0000313|EMBL:AEW04609.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Type III restriction protein res subunit n=2 Tax=Sulfobacillus acidophilus RepID=F8I4T4_SULAT (db=UNIREF evalue=3.8e-37 bit_score=160.6 identity=53.0 coverage=76.92307692307693)
seg (db=Seg db_id=seg from=11 to=24)
AMDSBAU_16_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12482..14035
DNA (1554bp) protein (518aa)
type III restriction protein res subunit
type III restriction protein res subunit
Type III restriction protein res subunit n=2 Tax=Sulfobacillus acidophilus RepID=F8I4T4_SULAT
Type III restriction protein res subunit {ECO:0000313|EMBL:AEJ40931.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus
AMDSBAU_16_18
unknown

Not on your lists

14093..14242
DNA (150bp) protein (50aa)
seg (db=Seg db_id=seg from=22 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
AMDSBAU_16_19
unknown

Not on your lists

14360..14599
DNA (240bp) protein (80aa)
14360..14599 + ( gc_cont=0.588)
AMDSBAU_16_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14605..15432
DNA (828bp) protein (276aa)
primase P4-like protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ40929.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Primase P4-like protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TU20_SULAD (db=UNIREF evalue=2.1e-57 bit_score=228.4 identity=44.2 coverage=97.10144927536231)
AMDSBAU_16_21
unknown

Not on your lists

comp(15767..15961)
DNA (195bp) protein (65aa)
15767..15961 - ( gc_cont=0.487)
AMDSBAU_16_22
unknown

Not on your lists

comp(16222..18360)
DNA (2139bp) protein (713aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=473 evalue=9.4e-16)
AMDSBAU_16_23
unknown

Not on your lists

19523..22399
DNA (2877bp) protein (959aa)
coiled-coil (db=Coil db_id=coil from=152 to=173 evalue=NA)
seg (db=Seg db_id=seg from=748 to=757)
seg (db=Seg db_id=seg from=611 to=622)
seg (db=Seg db_id=seg from=507 to=524)
AMDSBAU_16_24
unknown

Not on your lists

22542..22952
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=7 to=17)
seg (db=Seg db_id=seg from=111 to=136)
AMDSBAU_16_25
unknown

Not on your lists

23310..23591
DNA (282bp) protein (94aa)
seg (db=Seg db_id=seg from=43 to=54)
AMDSBAU_16_26
Pseudomonas coronafaciens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23619..25154
DNA (1536bp) protein (512aa)
Phage antirepressor protein {ECO:0000313|EMBL:KGS16291.1}; TaxID=53409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cor
hypothetical protein
Uncharacterized protein n=1 Tax=Pseudomonas putida HB3267 RepID=L0FQ91_PSEPU
coiled-coil (db=Coil db_id=coil from=240 to=261 evalue=NA)
AMDSBAU_16_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25289..26302
DNA (1014bp) protein (338aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1051632 species="Bacte
DNA polymerase III subunit beta n=2 Tax=Sulfobacillus acidophilus RepID=F8I307_SULAT (db=UNIREF evalue=6.5e-77 bit_score=293.5 identity=45.5 coverage=97.63313609467455)
no description (db=Gene3D db_id=G3DSA:3.10.150.10 from=1 to=119 evalue=1.0e-19 interpro_id=IPR024693 interpro_description=DNA polymerase III beta, domain)
AMDSBAU_16_28
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26479..26952
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri TS44 RepID=I4JQH5_PSEST (db=UNIREF evalue=1.4e-13 bit_score=82.0 identity=37.7 coverage=84.81012658227847)
seg (db=Seg db_id=seg from=2 to=10)
AMDSBAU_16_29
unknown

Not on your lists

27017..27541
DNA (525bp) protein (175aa)
seg (db=Seg db_id=seg from=71 to=84)
AMDSBAU_16_30
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27510..28007
DNA (498bp) protein (166aa)
Putative toxin-antitoxin system, toxin component {ECO:0000313|EMBL:EFK08962.1}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
Uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IN71_9CHRO
protein of unknown function DUF497
coiled-coil (db=Coil db_id=coil from=66 to=87 evalue=NA)
Displaying items 1-30 of 31 in total

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