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AMDSBAU_21

Alias: SULFO_OTHER_21

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_21_1
unknown

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3..80
DNA (78bp) protein (26aa)
3..80 + ( gc_cont=0.513)
AMDSBAU_21_2
Lactobacillus helsingborgensis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

144..2750
DNA (2607bp) protein (869aa)
Uncharacterized protein {ECO:0000313|EMBL:KJY60376.1}; TaxID=1218494 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus helsingborgensis.
hypothetical protein
Uncharacterized protein n=1 Tax=Lactobacillus kefiranofaciens (strain ZW3) RepID=F6CG73_LACKZ
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=45)
AMDSBAU_21_3
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2747..3661
DNA (915bp) protein (305aa)
30S ribosomal protein S1
30S ribosomal protein S1 n=1 Tax=Paenibacillus polymyxa SC2 RepID=E3EKS0_PAEPS (db=UNIREF evalue=4.6e-13 bit_score=81.3 identity=26.2 coverage=80.98360655737706)
no description (db=HMMSmart db_id=SM00316 from=148 to=216 evalue=0.064 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=145 to=243 evalue=1.1e-10 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
AMDSBAU_21_4
unknown

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3665..4573
DNA (909bp) protein (303aa)
seg (db=Seg db_id=seg from=238 to=253)
AMDSBAU_21_5
unknown

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5201..5323
DNA (123bp) protein (41aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBAU_21_6
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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5335..6549
DNA (1215bp) protein (405aa)
UPI000287C67C related cluster n=1 Tax=unknown RepID=UPI000287C67C
Uncharacterized protein {ECO:0000313|EMBL:AKF92663.1}; TaxID=1465 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus (Bacillus la
ERF family protein
seg (db=Seg db_id=seg from=387 to=400)
AMDSBAU_21_7
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6568..7551
DNA (984bp) protein (328aa)
hypothetical protein
TOPRIM {ECO:0000313|EMBL:ABC18692.1}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetic
TOPRIM n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLJ7_MOOTA (db=UNIREF evalue=7.6e-46 bit_score=190.3 identity=39.0 coverage=87.5)
AMDSBAU_21_8
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

7600..8853
DNA (1254bp) protein (418aa)
hypothetical protein Tax=AR6
coiled-coil (db=Coil db_id=coil from=298 to=326 evalue=NA)
seg (db=Seg db_id=seg from=280 to=294)
(db=HMMPfam db_id=PF10926 from=12 to=372 evalue=9.7e-12 interpro_id=IPR021229 interpro_description=Protein of unknown function DUF2800)
AMDSBAU_21_9
unknown

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8846..9217
DNA (372bp) protein (124aa)
8846..9217 + ( gc_cont=0.573)
AMDSBAU_21_10
unknown

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9214..9690
DNA (477bp) protein (159aa)
ZINC_FINGER_C2H2_1 (db=PatternScan db_id=PS00028 from=119 to=140 evalue=0.0 interpro_id=IPR007087 interpro_description=Zinc finger, C2H2 GO=Cellular Component: intracellular (GO:0005622), Molecular Function: zinc ion binding (GO:0008270))
AMDSBAU_21_11
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9792..10859
DNA (1068bp) protein (356aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM26064.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile t
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei DSM 6799 RepID=I4C923_DESTA (db=UNIREF evalue=6.5e-43 bit_score=180.6 identity=34.5 coverage=94.10112359550563)
seg (db=Seg db_id=seg from=312 to=326)
AMDSBAU_21_12
Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10856..13801
DNA (2946bp) protein (982aa)
DEAD/DEAH box helicase
DEAD/DEAH box helicase
DEAD-like helicase {ECO:0000313|EMBL:AFK94252.1}; TaxID=1094508 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacter
DEAD-like helicase n=1 Tax=Thermoanaerobacterium saccharolyticum JW/SL-YS485 RepID=I3WBQ1_THESW (db=UNIREF evalue=7.4e-113 bit_score=414.5 identity=36.2 coverage=61.5071283095723)
AMDSBAU_21_13
unknown

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13789..14595
DNA (807bp) protein (269aa)
seg (db=Seg db_id=seg from=164 to=175)
seg (db=Seg db_id=seg from=141 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=231 to=253)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=224)
AMDSBAU_21_14

Not on your lists

14895..15098
DNA (204bp) protein (68aa)
Marine sediment metagenome DNA, contig: S06H3_S29398 {ECO:0000313|EMBL:GAI67303.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=11 to=59 evalue=2.2e-12 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=10 to=60 evalue=3.1e-09 interpro_id=IPR009061 interpro_description=DNA binding domain, putative GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBAU_21_15
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

15059..15808
DNA (750bp) protein (250aa)
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:EFO80455.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" sou
Cobyrinic acid ac-diamide synthase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IEC9_9CHLR (db=UNIREF evalue=6.8e-31 bit_score=140.2 identity=35.5 coverage=94.39999999999999)
cobyrinic acid a,c-diamide synthase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=14 to=236 evalue=2.6e-35)
AMDSBAU_21_16
Exiguobacterium sp. MH3, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15825..16730
DNA (906bp) protein (302aa)
chromosome partitioning protein ParB
Chromosome partitioning protein ParB {ECO:0000313|EMBL:AHA31170.1}; TaxID=1399115 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="
Chromosome segregation DNA-binding protein n=10 Tax=Lactobacillus RepID=Q040U3_LACGA
seg (db=Seg db_id=seg from=277 to=290)
AMDSBAU_21_17
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16742..16933
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:AEP14256.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Putative uncharacterized protein orfL8 n=1 Tax=Sulfobacillus thermotolerans RepID=G5CIX9_9FIRM (db=UNIREF evalue=1.0e-10 bit_score=71.2 identity=60.7 coverage=85.9375)
AMDSBAU_21_18
unknown

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17101..17541
DNA (441bp) protein (147aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=139)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
AMDSBAU_21_19
unknown

Not on your lists

17557..17910
DNA (354bp) protein (118aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
seg (db=Seg db_id=seg from=18 to=33)
seg (db=Seg db_id=seg from=94 to=107)
AMDSBAU_21_20
unknown

Not on your lists

17976..18458
DNA (483bp) protein (161aa)
seg (db=Seg db_id=seg from=19 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
AMDSBAU_21_21
R_OD1_Moranbacteria_55_24, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

18455..19237
DNA (783bp) protein (261aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_55_24_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FDK0_9BACT (db=UNIREF evalue=2.2e-11 bit_score=75.5 identity=27.9 coverage=77.01149425287356)
hypothetical protein
AMDSBAU_21_22
Bacillus thuringiensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19282..21258
DNA (1977bp) protein (659aa)
Type IV secretory pathway VirB4 component-like protein
Type IV secretory pathway VirB4 component-like protein
Type IV secretory pathway VirB4 component-like protein n=1 Tax=Paenibacillus polymyxa (strain SC2) RepID=E3EKV4_PAEPS
Type IV secretory pathway VirB4 component-like protein n=1 Tax=Paenibacillus polymyxa SC2 RepID=E3EKV4_PAEPS (db=UNIREF evalue=1.0e-97 bit_score=363.6 identity=31.8 coverage=93.32321699544764)
AMDSBAU_21_23
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21503..22807
DNA (1305bp) protein (435aa)
HNH endonuclease
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:AEE97672.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mah
HNH endonuclease n=2 Tax=Mahella australiensis 50-1 BON RepID=F3ZWW0_MAHA5 (db=UNIREF evalue=7.7e-131 bit_score=473.0 identity=54.2 coverage=98.85057471264368)
AMDSBAU_21_24
Gossypium raimondii, Gossypium, Malvales, rosids, Streptophyta, Viridiplantae

Not on your lists

22758..25124
DNA (2367bp) protein (789aa)
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:KJB21095.1}; TaxID=29730 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Epstein-Barr nuclear antigen 1 n=7 Tax=Epstein-Barr virus (strain GD1) RepID=EBNA1_EBVB9
seg (db=Seg db_id=seg from=641 to=652)
AMDSBAU_21_25
unknown

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25347..25667
DNA (321bp) protein (107aa)
seg (db=Seg db_id=seg from=72 to=91)
AMDSBAU_21_26
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25697..26551
DNA (855bp) protein (285aa)
transposase IS204/IS1001/IS1096/IS1165 family protein
Transposase IS204/IS1001/IS1096/IS1165 family protein {ECO:0000313|EMBL:ADU50486.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; T
Transposase IS204/IS1001/IS1096/IS1165 family protein n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SG69_THEM7 (db=UNIREF evalue=5.2e-67 bit_score=260.4 identity=50.2 coverage=98.94736842105263)
seg (db=Seg db_id=seg from=53 to=70)
Displaying 26 items

View Taxonomy