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AMDSBAU_22

Alias: SULFO_OTHER_22

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_22_1
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..620)
DNA (618bp) protein (206aa)
Zinc-binding dehydrogenase n=1 Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EHN9_STRRM
Zinc-binding dehydrogenase {ECO:0000313|EMBL:ELQ79063.1}; TaxID=1265868 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimo
alcohol dehydrogenase GroES domain-containing protein
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=11 to=205 evalue=1.0e-39 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBAU_22_2
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1496..2335)
DNA (840bp) protein (280aa)
UxuB protein
Dioxygenase {ECO:0000313|EMBL:AFH61431.1}; EC=1.1.1.131 {ECO:0000313|EMBL:AFH61431.1};; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paen
UxuB n=3 Tax=Paenibacillus mucilaginosus RepID=H6NKU6_9BACL (db=UNIREF evalue=9.5e-90 bit_score=335.9 identity=61.3 coverage=99.28571428571429)
ADH_SHORT (db=PatternScan db_id=PS00061 from=162 to=190 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBAU_22_3
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2369..4390)
DNA (2022bp) protein (674aa)
alpha-glucuronidase
Xylan alpha-1,2-glucuronidase {ECO:0000256|RuleBase:RU361198}; EC=3.2.1.131 {ECO:0000256|RuleBase:RU361198};; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermob
Alpha-glucuronidase n=1 Tax=Thermobacillus composti KWC4 RepID=G4E9V1_9BACL (db=UNIREF evalue=4.0e-219 bit_score=766.9 identity=55.4 coverage=98.07121661721068)
seg (db=Seg db_id=seg from=60 to=80)
AMDSBAU_22_4
Caldanaerobius polysaccharolyticus, Caldanaerobius, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4406..6757)
DNA (2352bp) protein (784aa)
Xyl3A {ECO:0000313|EMBL:AFM44649.1}; EC=3.2.1.37 {ECO:0000313|EMBL:AFM44649.1};; TaxID=44256 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobius.
Xyl3A n=1 Tax=Caldanaerobius polysaccharolyticus RepID=I6R6X6_9THEO (db=UNIREF evalue=2.1e-256 bit_score=891.0 identity=56.8 coverage=98.5969387755102)
glycoside hydrolase family 3 domain-containing protein
GLYCOSYL_HYDROL_F3 (db=PatternScan db_id=PS00775 from=269 to=286 evalue=0.0 interpro_id=IPR019800 interpro_description=Glycoside hydrolase, family 3, active site GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBAU_22_5
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7119..7823)
DNA (705bp) protein (235aa)
Uncharacterized protein {ECO:0000313|EMBL:EPZ43475.1}; TaxID=1356854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidoterrestr
Transcriptional regulator, GntR family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HH72_9BACL (db=UNIREF evalue=2.6e-48 bit_score=198.0 identity=44.9 coverage=98.72340425531915)
GntR family transcriptional regulator
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=11 to=83 evalue=1.7e-14)
AMDSBAU_22_6
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7834..8808)
DNA (975bp) protein (325aa)
Contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIU03638.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
dppF; oligopeptide/dipeptide ABC transporter ATP-binding protein
Oligopeptide/dipeptide ABC transporter ATP-binding protein n=1 Tax=Corallococcus coralloides DSM 2259 RepID=H8MU61_CORCM (db=UNIREF evalue=7.7e-67 bit_score=260.0 identity=43.9 coverage=94.76923076923077)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=149 to=163 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBAU_22_7
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(8780..9769)
DNA (990bp) protein (330aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TT36_9CHLR (db=UNIREF evalue=7.3e-81 bit_score=306.6 identity=49.7 coverage=98.7878787878788)
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:EFH83587.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobactera
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TT36_9CHLR
oligopeptide/dipeptide ABC transporter ATPase
AMDSBAU_22_8
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(9766..10683)
DNA (918bp) protein (306aa)
binding-protein-dependent transport systems inner membrane component
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M244_ACIFD
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACU53142.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae;
AMDSBAU_22_9
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(10686..11684)
DNA (999bp) protein (333aa)
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACU53141.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae;
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M243_ACIFD (db=UNIREF evalue=2.7e-115 bit_score=421.0 identity=60.7 coverage=97.2972972972973)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
AMDSBAU_22_10
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11927..12739)
DNA (813bp) protein (271aa)
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIQ59927.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
Uncharacterized protein n=2 Tax=Geobacillus RepID=C9RT33_GEOSY
NIF3 (NGG1p interacting factor 3)-like (db=superfamily db_id=SSF102705 from=1 to=270 evalue=9.8e-29 interpro_id=IPR002678 interpro_description=NGG1p interacting factor 3, NIF3)
AMDSBAU_22_11
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(12869..14524)
DNA (1656bp) protein (552aa)
family 5 extracellular solute-binding protein
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M242_ACIFD
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACU53140.1}; Flags: Precursor;; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Aci
AMDSBAU_22_12
unknown

Not on your lists

15273..15449
DNA (177bp) protein (59aa)
15273..15449 + ( gc_cont=0.514)
AMDSBAU_22_13
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15365..16261)
DNA (897bp) protein (299aa)
ROK family protein
ROK family protein
ROK family protein n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WY53_BACT2
ROK family protein {ECO:0000313|EMBL:ADG06112.1}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 153
AMDSBAU_22_14
Caldatribacterium saccharofermentans, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

comp(16634..17575)
DNA (942bp) protein (314aa)
PfkB domain-containing protein Tax=Caldatribacterium saccharofermentans
PfkB domain-containing protein
PfkB domain protein n=1 Tax=Desulfotomaculum ruminis DSM 2154 RepID=F6DUV4_DESRL (db=UNIREF evalue=1.5e-46 bit_score=192.6 identity=35.9 coverage=97.13375796178345)
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=307 evalue=1.2e-66)
AMDSBAU_22_15
Brachybacterium faecium, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17586..18347)
DNA (762bp) protein (254aa)
transcriptional regulator of sugar metabolism
Transcriptional regulator of sugar metabolism {ECO:0000313|EMBL:ACU86030.1}; TaxID=446465 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium
Transcriptional regulator of sugar metabolism n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MEN0_BRAFD (db=UNIREF evalue=1.0e-34 bit_score=152.9 identity=36.9 coverage=96.45669291338582)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=9 to=42 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_22_16
Pseudothermotoga thermarum, Pseudothermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(18367..19806)
DNA (1440bp) protein (480aa)
xylulokinase
Xylulokinase {ECO:0000313|EMBL:AEH50261.1}; TaxID=688269 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga.;" source="Pseudothermotoga thermarum DSM 5069.;"
Xylulokinase n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YUS4_9THEM (db=UNIREF evalue=6.5e-46 bit_score=191.0 identity=30.0 coverage=98.125)
(db=HMMPfam db_id=PF02782 from=279 to=429 evalue=1.5e-09 interpro_id=IPR018485 interpro_description=Carbohydrate kinase, FGGY, C-terminal GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBAU_22_17
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19832..20629)
DNA (798bp) protein (266aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ABK52494.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ABK52494.1};; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.
Fructose-bisphosphate aldolase n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LST4_ACIC1 (db=UNIREF evalue=3.4e-44 bit_score=184.5 identity=38.7 coverage=95.86466165413535)
(db=HMMPfam db_id=PF01791 from=19 to=239 evalue=1.1e-19 interpro_id=IPR002915 interpro_description=Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase GO=Molecular Function: lyase activity (GO:0016829))
AMDSBAU_22_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20657..21676)
DNA (1020bp) protein (340aa)
putative ABC transporter permease
putative ABC transporter permease
Monosaccharide ABC transporter membrane protein, CUT2 family n=3 Tax=Acidiphilium RepID=A5FVU7_ACICJ
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ABQ29729.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Aci
AMDSBAU_22_19
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21660..23177)
DNA (1518bp) protein (506aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
ABC transporter-like protein
ABC transporter-like protein
Monosaccharide ABC transporter ATP-binding protein, CUT2 family n=3 Tax=Acidiphilium RepID=A5FVU6_ACICJ
AMDSBAU_22_20
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23268..24263)
DNA (996bp) protein (332aa)
putative ABC transporter substrate-binding protein rbh
putative ABC transporter substrate-binding protein rbh
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=3 Tax=Acidiphilium RepID=A5FVU5_ACICJ
Monosaccharide ABC transporter substrate-binding protein, CUT2 family {ECO:0000313|EMBL:ABQ29727.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospiril
AMDSBAU_22_21
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

24426..25400
DNA (975bp) protein (325aa)
mannose-6-phosphate isomerase, type 1 (EC:5.3.1.8)
Mannose-6-phosphate isomerase, type 1 {ECO:0000313|EMBL:AFZ29228.1}; EC=5.3.1.8 {ECO:0000313|EMBL:AFZ29228.1};; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gl
Mannose-6-phosphate isomerase, type 1 n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9X9R8_9CHRO
MANNOSE-6-PHOSPHATE ISOMERASE (db=HMMPanther db_id=PTHR18964:SF1 from=17 to=183 evalue=1.6e-20 interpro_id=IPR014628 interpro_description=Mannose-6-phosphate isomerase, Firmicutes type, short form GO=Molecular Function: mannose-6-phosphate isomerase activity (GO:0004476))
Displaying 21 items

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