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AMDSBAU_28

Alias: SULFO_OTHER_28

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_28_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(184..1392)
-----------------
DNA (1209bp)
protein (403aa)
integrase family protein rbh
integrase family protein rbh
Integrase family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6F7_SULAT
Integrase family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6F7_SULAT (db=UNIREF evalue=4.5e-218 bit_score=762.7 identity=91.0 coverage=99.50372208436724)
AMDSBAU_28_2
unknown

Not on your lists

1470..1655
-----------------
DNA (186bp)
protein (62aa)
1470..1655 + ( gc_cont=0.527)
AMDSBAU_28_3
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1661..4534
-----------------
DNA (2874bp)
protein (958aa)
hypothetical protein
hypothetical protein
Uncharacterized protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJP9_DESAR
Putative uncharacterized protein n=1 Tax=Desulfobacca acetoxidans DSM 11109 RepID=F2NJP9_DESAR (db=UNIREF evalue=1.4e-180 bit_score=639.4 identity=39.7 coverage=97.59916492693111)
AMDSBAU_28_4
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4650..5654
-----------------
DNA (1005bp)
protein (335aa)
hypothetical protein
seg (db=Seg db_id=seg from=152 to=161)
(db=HMMPfam db_id=PF04326 from=19 to=145 evalue=1.6e-15 interpro_id=IPR007421 interpro_description=ATPase, AAA-4 GO=Molecular Function: ATP binding (GO:0005524))
AMDSBAU_28_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5775..5930)
-----------------
DNA (156bp)
protein (52aa)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6F0_SULAT
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBAU_28_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5927..6532)
-----------------
DNA (606bp)
protein (202aa)
Resolvase domain-containing protein
Resolvase domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY51_SULAD (db=UNIREF evalue=7.7e-57 bit_score=226.1 identity=59.0 coverage=98.01980198019803)
Resolvase-like (db=superfamily db_id=SSF53041 from=1 to=149 evalue=1.9e-33 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:3.40.50.1390 from=1 to=131 evalue=3.2e-25 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
AMDSBAU_28_7
unknown

Not on your lists

comp(6784..7329)
-----------------
DNA (546bp)
protein (182aa)
6784..7329 - ( gc_cont=0.667)
AMDSBAU_28_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7443..8021)
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein
DNA topoisomerase n=2 Tax=Sulfobacillus acidophilus RepID=F8I6E7_SULAT (db=UNIREF evalue=2.0e-78 bit_score=297.7 identity=75.7 coverage=95.33678756476684)
AMDSBAU_28_9
unknown

Not on your lists

comp(8146..8850)
-----------------
DNA (705bp)
protein (235aa)
seg (db=Seg db_id=seg from=219 to=234)
seg (db=Seg db_id=seg from=4 to=31)
AMDSBAU_28_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8868..9665)
-----------------
DNA (798bp)
protein (266aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6E6_SULAT
seg (db=Seg db_id=seg from=33 to=51)
seg (db=Seg db_id=seg from=152 to=163)
AMDSBAU_28_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9762..9977)
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY47_SULAD
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBAU_28_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9974..11590)
-----------------
DNA (1617bp)
protein (539aa)
TraG/TraD family protein rbh
TraG/TraD family protein rbh
TraG/TraD family protein n=1 Tax=Sulfobacillus acidophilus (strain TPY) RepID=F8I6E4_SULAT
TraG/TraD family protein n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I6E4_SULAT (db=UNIREF evalue=2.0e-208 bit_score=731.1 identity=84.7 coverage=79.96289424860854)
AMDSBAU_28_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11623..14301)
-----------------
DNA (2679bp)
protein (893aa)
conjugative relaxase domain-containing protein rbh
conjugative relaxase domain-containing protein rbh
Conjugative relaxase domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY45_SULAD (db=UNIREF evalue=0.0 bit_score=1432.9 identity=80.0 coverage=99.77603583426652)
Conjugative relaxase domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY45_SULAD
AMDSBAU_28_14
unknown

Not on your lists

comp(14389..14577)
-----------------
DNA (189bp)
protein (63aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=45 to=58)
AMDSBAU_28_15
unknown

Not on your lists

comp(14574..14921)
-----------------
DNA (348bp)
protein (116aa)
seg (db=Seg db_id=seg from=18 to=30)
(db=HMMPfam db_id=PF01402 from=11 to=45 evalue=4.8e-06 interpro_id=IPR002145 interpro_description=CopG-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_28_16
unknown

Not on your lists

comp(15124..15402)
-----------------
DNA (279bp)
protein (93aa)
15124..15402 - ( gc_cont=0.659)
AMDSBAU_28_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15383..15787)
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D8_SULAT
seg (db=Seg db_id=seg from=104 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
AMDSBAU_28_18
unknown

Not on your lists

comp(15760..15993)
-----------------
DNA (234bp)
protein (78aa)
15760..15993 - ( gc_cont=0.556)
AMDSBAU_28_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16251..17732)
-----------------
DNA (1482bp)
protein (494aa)
AAA ATPase
ATPase n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D6_SULAT (db=UNIREF evalue=2.7e-156 bit_score=557.8 identity=58.9 coverage=99.19028340080972)
seg (db=Seg db_id=seg from=113 to=131)
seg (db=Seg db_id=seg from=465 to=486)
AMDSBAU_28_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17732..18220)
-----------------
DNA (489bp)
protein (163aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D5_SULAT
seg (db=Seg db_id=seg from=26 to=38)
seg (db=Seg db_id=seg from=80 to=95)
AMDSBAU_28_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18204..18398)
-----------------
DNA (195bp)
protein (65aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D4_SULAT
AMDSBAU_28_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18484..18711)
-----------------
DNA (228bp)
protein (76aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D3_SULAT
AMDSBAU_28_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18788..19147)
-----------------
DNA (360bp)
protein (120aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D2_SULAT
seg (db=Seg db_id=seg from=58 to=73)
seg (db=Seg db_id=seg from=86 to=98)
AMDSBAU_28_24
Leptospirillum sp. Group II 'C75', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(19801..20718)
-----------------
DNA (918bp)
protein (306aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SGA4_GALCS
seg (db=Seg db_id=seg from=19 to=31)
seg (db=Seg db_id=seg from=284 to=305)
AMDSBAU_28_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20690..21718)
-----------------
DNA (1029bp)
protein (343aa)
recombinase A
Replication protein A n=1 Tax=Helicobacter felis (strain ATCC 49179 / NCTC 12436 / CS1) RepID=E7ABN7_HELFC
seg (db=Seg db_id=seg from=2 to=8)
seg (db=Seg db_id=seg from=301 to=313)
AMDSBAU_28_26
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(21718..22683)
-----------------
DNA (966bp)
protein (322aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Terriglobus roseus DSM 18391 RepID=I3ZJ60_TERRK (db=UNIREF evalue=4.1e-12 bit_score=78.2 identity=40.7 coverage=32.91925465838509)
AMDSBAU_28_27
Actinotignum schaalii, Actinotignum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22785..22955)
-----------------
DNA (171bp)
protein (57aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=7 to=51 evalue=4.9e-08 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_28_28
unknown

Not on your lists

23068..23787
-----------------
DNA (720bp)
protein (240aa)
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=9 to=85 evalue=0.00018 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=12 to=67 evalue=0.00022 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=73 evalue=5.1e-08 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=13 to=64 evalue=8.5e-06 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Displaying 28 items

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