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AMDSBAU_31

Alias: SULFO_OTHER_31

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_31_1
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(75..317)
-----------------
DNA (243bp)
protein (81aa)
Putative uncharacterized protein orfL8 n=1 Tax=Sulfobacillus thermotolerans RepID=G5CIX9_9FIRM (db=UNIREF evalue=1.1e-09 bit_score=68.2 identity=60.3 coverage=69.1358024691358)
AMDSBAU_31_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(477..1037)
-----------------
DNA (561bp)
protein (187aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sorangium cellulosum So ce56 RepID=A9G946_SORC5 (db=UNIREF evalue=5.3e-12 bit_score=77.0 identity=50.0 coverage=41.711229946524064)
(db=HMMPfam db_id=PF10544 from=11 to=76 evalue=1.1e-14 interpro_id=IPR018306 interpro_description=Bacteriophage T5, Orf172 DNA-binding)
AMDSBAU_31_3
unknown

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comp(1072..1674)
-----------------
DNA (603bp)
protein (201aa)
1072..1674 - ( gc_cont=0.542)
AMDSBAU_31_4
unknown

Not on your lists

comp(1712..2032)
-----------------
DNA (321bp)
protein (107aa)
seg (db=Seg db_id=seg from=82 to=91)
AMDSBAU_31_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2165..3034
-----------------
DNA (870bp)
protein (290aa)
Resolvase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UE14_9RHOB (db=UNIREF evalue=2.8e-68 bit_score=264.6 identity=50.5 coverage=94.13793103448276)
resolvase domain-containing protein
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
seg (db=Seg db_id=seg from=172 to=185)
AMDSBAU_31_6
unknown

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3056..4024
-----------------
DNA (969bp)
protein (323aa)
seg (db=Seg db_id=seg from=125 to=134)
AMDSBAU_31_7
unknown

Not on your lists

4131..4376
-----------------
DNA (246bp)
protein (82aa)
4131..4376 + ( gc_cont=0.606)
AMDSBAU_31_8
unknown

Not on your lists

4458..4712
-----------------
DNA (255bp)
protein (85aa)
4458..4712 + ( gc_cont=0.553)
AMDSBAU_31_9
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4780..6399
-----------------
DNA (1620bp)
protein (540aa)
Putative uncharacterized protein n=1 Tax=Desmospora sp. 8437 RepID=F5SDF8_9BACL
Putative uncharacterized protein n=1 Tax=Desmospora sp. 8437 RepID=F5SDF8_9BACL (db=UNIREF evalue=2.8e-106 bit_score=391.7 identity=42.3 coverage=96.66666666666667)
type III restriction protein res subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
AMDSBAU_31_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

6396..9473
-----------------
DNA (3078bp)
protein (1026aa)
Putative uncharacterized protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TT1_SOLUE (db=UNIREF evalue=2.6e-137 bit_score=495.7 identity=40.1 coverage=67.44639376218323)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TT1_SOLUE
AMDSBAU_31_11
unknown

Not on your lists

9653..9961
-----------------
DNA (309bp)
protein (103aa)
9653..9961 + ( gc_cont=0.583)
AMDSBAU_31_12

Not on your lists

9993..10484
-----------------
DNA (492bp)
protein (164aa)
Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTV1_9BACL (db=UNIREF evalue=1.3e-22 bit_score=112.1 identity=44.1 coverage=81.70731707317073)
hypothetical protein
seg (db=Seg db_id=seg from=126 to=131)
AMDSBAU_31_13
unknown

Not on your lists

10624..12135
-----------------
DNA (1512bp)
protein (504aa)
seg (db=Seg db_id=seg from=367 to=378)
AMDSBAU_31_14
unknown

Not on your lists

12153..12803
-----------------
DNA (651bp)
protein (217aa)
seg (db=Seg db_id=seg from=94 to=107)
AMDSBAU_31_15
unknown

Not on your lists

comp(12819..14417)
-----------------
DNA (1599bp)
protein (533aa)
seg (db=Seg db_id=seg from=323 to=339)
seg (db=Seg db_id=seg from=309 to=318)
seg (db=Seg db_id=seg from=177 to=191)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBAU_31_16
unknown

Not on your lists

comp(14702..14950)
-----------------
DNA (249bp)
protein (83aa)
14702..14950 - ( gc_cont=0.627)
AMDSBAU_31_17
unknown

Not on your lists

15366..15728
-----------------
DNA (363bp)
protein (121aa)
15366..15728 + ( gc_cont=0.650)
AMDSBAU_31_18
unknown

Not on your lists

comp(15783..16370)
-----------------
DNA (588bp)
protein (196aa)
seg (db=Seg db_id=seg from=166 to=175)
AMDSBAU_31_19
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17133..18482)
-----------------
DNA (1350bp)
protein (450aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RDH1_AMMDK (db=UNIREF evalue=8.6e-101 bit_score=373.2 identity=48.9 coverage=93.33333333333333)
coiled-coil (db=Coil db_id=coil from=384 to=405 evalue=NA)
seg (db=Seg db_id=seg from=407 to=424)
AMDSBAU_31_20
unknown

Not on your lists

18510..19085
-----------------
DNA (576bp)
protein (192aa)
seg (db=Seg db_id=seg from=162 to=181)
AMDSBAU_31_21
Pontibacillus litoralis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19115..19678
-----------------
DNA (564bp)
protein (188aa)
regulatory protein MerR
Regulatory protein MerR n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZD3_DESRD (db=UNIREF evalue=3.0e-15 bit_score=87.8 identity=34.3 coverage=87.7659574468085)
coiled-coil (db=Coil db_id=coil from=116 to=137 evalue=NA)
seg (db=Seg db_id=seg from=85 to=100)
AMDSBAU_31_22
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

19927..21387
-----------------
DNA (1461bp)
protein (487aa)
HNH endonuclease
HNH endonuclease n=2 Tax=Mahella australiensis 50-1 BON RepID=F3ZWW0_MAHA5 (db=UNIREF evalue=2.1e-124 bit_score=451.8 identity=51.5 coverage=92.1971252566735)
seg (db=Seg db_id=seg from=34 to=48)
(db=HMMPfam db_id=PF01844 from=212 to=263 evalue=1.4e-10 interpro_id=IPR002711 interpro_description=HNH endonuclease GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: endonuclease activity (GO:0004519))
AMDSBAU_31_23
unknown

Not on your lists

21387..21896
-----------------
DNA (510bp)
protein (170aa)
seg (db=Seg db_id=seg from=52 to=65)
AMDSBAU_31_24
unknown

Not on your lists

21887..22240
-----------------
DNA (354bp)
protein (118aa)
seg (db=Seg db_id=seg from=31 to=42)
AMDSBAU_31_25
unknown

Not on your lists

comp(22265..22558)
-----------------
DNA (294bp)
protein (98aa)
22265..22558 - ( gc_cont=0.588)
AMDSBAU_31_26
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22683..23261)
-----------------
DNA (579bp)
protein (193aa)
transposon IS605 OrfB
Transposase OrfB n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SBA4_9BURK (db=UNIREF evalue=1.1e-44 bit_score=185.7 identity=58.8 coverage=78.75647668393782)
coiled-coil (db=Coil db_id=coil from=28 to=49 evalue=NA)
(db=HMMPfam db_id=PF07282 from=89 to=156 evalue=1.9e-25 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
Displaying 26 items

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