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AMDSBAU_121

Alias: SULFO_OTHER_121

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_121_1
unknown

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2..94
-----------------
DNA (93bp)
protein (31aa)
2..94 + ( gc_cont=0.581)
AMDSBAU_121_2
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(157..2370)
-----------------
DNA (2214bp)
protein (738aa)
DNA polymerase I-like protein
DNA polymerase n=3 Tax=Cyanothece RepID=A3IRZ6_9CHRO (db=UNIREF evalue=2.4e-39 bit_score=169.9 identity=37.0 coverage=34.959349593495936)
(db=HMMPfam db_id=PF01612 from=100 to=255 evalue=1.2e-20 interpro_id=IPR002562 interpro_description=3'-5' exonuclease domain GO=Molecular Function: nucleic acid binding (GO:0003676), Cellular Component: intracellular (GO:0005622), Biological Process: nucleobase-containing compound metabolic process (GO:0006139), Molecular Function: 3'-5' exonuclease activity (GO:0008408))
no description (db=Gene3D db_id=G3DSA:1.10.150.20 from=518 to=661 evalue=1.4e-24)
AMDSBAU_121_3
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2484..3611
-----------------
DNA (1128bp)
protein (376aa)
sporulation protein YhbH
Sporulation protein YhbH n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SG81_THEM7 (db=UNIREF evalue=4.5e-34 bit_score=151.4 identity=32.6 coverage=76.86170212765957)
seg (db=Seg db_id=seg from=49 to=60)
seg (db=Seg db_id=seg from=90 to=101)
AMDSBAU_121_4
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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3557..4960
-----------------
DNA (1404bp)
protein (468aa)
SpoVR family protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A6C7_THEAQ (db=UNIREF evalue=7.5e-23 bit_score=114.4 identity=31.1 coverage=61.75213675213676)
stage V sporulation protein R
(db=HMMPfam db_id=PF04293 from=36 to=343 evalue=7.9e-25 interpro_id=IPR007390 interpro_description=Sporulation stage V, protein R)
AMDSBAU_121_5
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4965..6890
-----------------
DNA (1926bp)
protein (642aa)
serine protein kinase
Serine protein kinase n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=Q67RC0_SYMTH (db=UNIREF evalue=1.4e-125 bit_score=456.1 identity=39.3 coverage=98.13084112149532)
no description (db=HMMSmart db_id=SM00763 from=29 to=373 evalue=1.2e-112 interpro_id=IPR013153 interpro_description=PrkA AAA)
(db=HMMPfam db_id=PF06798 from=394 to=634 evalue=1.9e-52 interpro_id=IPR010650 interpro_description=Serine kinase PrkA)
AMDSBAU_121_6
unknown

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6907..7227
-----------------
DNA (321bp)
protein (107aa)
6907..7227 + ( gc_cont=0.542)
AMDSBAU_121_7
unknown

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7221..7796
-----------------
DNA (576bp)
protein (192aa)
seg (db=Seg db_id=seg from=18 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
AMDSBAU_121_8

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8039..8470
-----------------
DNA (432bp)
protein (144aa)
dCMP deaminase
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=D3RYG2_FERPA (db=UNIREF evalue=3.3e-22 bit_score=110.5 identity=45.8 coverage=89.58333333333334)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=70 to=102 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
dCMP deaminase (db=HMMPIR db_id=PIRSF006019 from=1 to=140 evalue=2.4e-30 interpro_id=IPR016473 interpro_description=dCMP deaminase GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
AMDSBAU_121_9
Candidatus Methanomethylophilus alvus, Candidatus Methanomethylophilus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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8515..8691
-----------------
DNA (177bp)
protein (59aa)
PUA domain-like (db=superfamily db_id=SSF88697 from=1 to=43 evalue=1.3e-07 interpro_id=IPR015947 interpro_description=PUA-like domain)
(db=HMMPfam db_id=PF04266 from=5 to=53 evalue=2.4e-05 interpro_id=IPR007374 interpro_description=ASCH domain)
AMDSBAU_121_10
unknown

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8839..8946
-----------------
DNA (108bp)
protein (36aa)
8839..8946 + ( gc_cont=0.537)
AMDSBAU_121_11
unknown

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8946..9017
-----------------
DNA (72bp)
protein (24aa)
8946..9017 + ( gc_cont=0.431)
Displaying 11 items

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