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AMDSBAU_294

Alias: SULFO_OTHER_294

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_294_1
unknown

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comp(3..158)
-----------------
DNA (156bp)
protein (52aa)
seg (db=Seg db_id=seg from=38 to=50)
AMDSBAU_294_2
unknown

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comp(178..342)
-----------------
DNA (165bp)
protein (55aa)
seg (db=Seg db_id=seg from=30 to=46)
seg (db=Seg db_id=seg from=16 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
AMDSBAU_294_3
Geobacillus sp. Y412MC52, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(425..1315)
-----------------
DNA (891bp)
protein (297aa)
recT; recombination and repair protein RecT
RecT protein n=3 Tax=Geobacillus RepID=C9S1B3_GEOSY (db=UNIREF evalue=1.4e-78 bit_score=298.9 identity=57.2 coverage=89.8989898989899)
(db=HMMPfam db_id=PF03837 from=54 to=245 evalue=1.5e-57 interpro_id=IPR018330 interpro_description=DNA single-strand annealing protein RecT-like GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA metabolic process (GO:0006259))
rect: recombinase, phage RecT family (db=HMMTigr db_id=TIGR00616 from=3 to=240 evalue=1.3e-93 interpro_id=IPR004590 interpro_description=DNA single-strand annealing protein RecT GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA metabolic process (GO:0006259))
AMDSBAU_294_4
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1318..2280)
-----------------
DNA (963bp)
protein (321aa)
endonuclease yqaj superfamily
Endonuclease YqaJ superfamily n=3 Tax=Paenibacillus polymyxa RepID=E3E5A0_PAEPS
coiled-coil (db=Coil db_id=coil from=240 to=266 evalue=NA)
seg (db=Seg db_id=seg from=241 to=256)
AMDSBAU_294_5
unknown

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comp(2359..2586)
-----------------
DNA (228bp)
protein (76aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=2 to=71 evalue=1.2e-12 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=3 to=61 evalue=1.1e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=3 to=58 evalue=2.9e-14 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF01381 from=4 to=58 evalue=6.4e-15 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBAU_294_6
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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2619..2930
-----------------
DNA (312bp)
protein (104aa)
Transcriptional regulator, XRE family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0K0_9BRAD (db=UNIREF evalue=6.8e-09 bit_score=65.9 identity=44.3 coverage=75.0)
transcriptional regulator
seg (db=Seg db_id=seg from=34 to=47)
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=26 to=92 evalue=1.6e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_294_7
unknown

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2927..3127
-----------------
DNA (201bp)
protein (67aa)
2927..3127 + ( gc_cont=0.562)
AMDSBAU_294_8
unknown

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comp(3099..3344)
-----------------
DNA (246bp)
protein (82aa)
3099..3344 - ( gc_cont=0.569)
Displaying 8 items

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