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AMDSBAU_323

Alias: SULFO_OTHER_323

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Displaying 8 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_323_1
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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comp(149..1099)
DNA (951bp) protein (317aa)
hypothetical protein Tax=RBG_16_Acidobacteria_64_8_curated
putative transcriptional regulator
Putative transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D084_PELTS (db=UNIREF evalue=4.2e-17 bit_score=94.7 identity=28.6 coverage=67.50788643533123)
seg (db=Seg db_id=seg from=148 to=159)
AMDSBAU_323_2
unknown

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comp(1141..1350)
DNA (210bp) protein (70aa)
(db=HMMPfam db_id=PF05930 from=14 to=57 evalue=4.6e-06 interpro_id=IPR010260 interpro_description=Bacteriophage P4, Orf88)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=15 to=63 evalue=6.3e-09 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_323_3
unknown

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comp(1408..1755)
DNA (348bp) protein (116aa)
1408..1755 - ( gc_cont=0.580)
AMDSBAU_323_4
unknown

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comp(1855..2388)
DNA (534bp) protein (178aa)
seg (db=Seg db_id=seg from=104 to=122)
AMDSBAU_323_5
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2509..2727)
DNA (219bp) protein (73aa)
Putative transcriptional regulator with C-terminal CBS domains {ECO:0000313|EMBL:EIJ42349.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggia
ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 (MULTIPROTEIN BRIDGING FACTOR 1) (db=HMMPanther db_id=PTHR10245 from=3 to=70 evalue=1.5e-05)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=2 to=70 evalue=1.1e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=3 to=58 evalue=2.9e-17 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBAU_323_6
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2797..3039
DNA (243bp) protein (81aa)
Predicted transcriptional regulators {ECO:0000313|EMBL:CDC68075.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" so
ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 (MULTIPROTEIN BRIDGING FACTOR 1) (db=HMMPanther db_id=PTHR10245 from=15 to=70 evalue=5.3e-05)
no description (db=HMMSmart db_id=SM00530 from=18 to=73 evalue=2.1e-16 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=10 to=79 evalue=2.6e-17 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
AMDSBAU_323_7
unknown

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3297..3482
DNA (186bp) protein (62aa)
(db=HMMPfam db_id=PF01402 from=12 to=49 evalue=1.5e-05 interpro_id=IPR002145 interpro_description=CopG-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_323_8
unknown

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3524..3691
DNA (168bp) protein (56aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
Displaying 8 items

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