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anamox1_curated_scaffold_1938

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_1938_1
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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2..2989
DNA (2988bp) protein (996aa)
Signal transduction histidine kinase, nitrogen specific, NtrB bin=GWF2_Lentisphaerae_57_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
PAS/PAC sensor hybrid histidine kinase
Tax=GWF2_Lentisphaerae_57_35_curated
anamox1_curated_scaffold_1938_2
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

3067..4017
DNA (951bp) protein (317aa)
hypothetical protein Tax=unclassified candidate division EM 19 RepID=UPI00037DD2D2
Methane oxygenase PmoA
Tax=RBG_16_Planctomycetes_55_9_curated
anamox1_curated_scaffold_1938_3

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4041..5342
DNA (1302bp) protein (434aa)
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00037ABA7B
Marine sediment metagenome DNA, contig: S12H4_L00703 {ECO:0000313|EMBL:GAI79335.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
oxidoreductase domain-containing protein
anamox1_curated_scaffold_1938_4
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

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comp(5455..6129)
DNA (675bp) protein (225aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000362D826
putative fimbrial protein
Tax=BJP_IG2102_BRC1_58_13
anamox1_curated_scaffold_1938_5
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6104..7327)
DNA (1224bp) protein (408aa)
LacI family transcriptional regulator Tax=Streptomyces RepID=UPI000362C2DA
HTH-type transcriptional regulator CelR {ECO:0000313|EMBL:EFL25890.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
LacI family transcriptional regulator
anamox1_curated_scaffold_1938_6
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

7530..9044
DNA (1515bp) protein (505aa)
PAS modulated sigma54 specific transcriptional regulator, Fis family Tax=Nitrospina gracilis 3/211 RepID=M1YVR9_9BACT
PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:CCQ89407.1}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
Fis family transcriptional regulator
anamox1_curated_scaffold_1938_7
unknown

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9214..9546
DNA (333bp) protein (111aa)

This feature has no annotations

anamox1_curated_scaffold_1938_8
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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9593..10825
DNA (1233bp) protein (411aa)
icsS2; cysteine desulfurase IscS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Cysteine desulfurase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1Z6_ACIC5
anamox1_curated_scaffold_1938_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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10898..11317
DNA (420bp) protein (140aa)
FeS cluster assembly scaffold IscU Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037E73A7
FeS cluster assembly scaffold IscU
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
anamox1_curated_scaffold_1938_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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11368..11691
DNA (324bp) protein (108aa)
Iron-sulfur cluster assembly protein IscA bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
iscA; iron-sulfur cluster assembly protein IscA
Tax=RBG_16_Actinobacteria_67_10_curated
anamox1_curated_scaffold_1938_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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11796..12461
DNA (666bp) protein (222aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000365C989
hscB; Fe-S protein assembly co-chaperone HscB
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
anamox1_curated_scaffold_1938_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12458..14347
DNA (1890bp) protein (630aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hscA; chaperone protein HscA
Tax=CSP1_6_Rokubacteria
anamox1_curated_scaffold_1938_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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14367..15521
DNA (1155bp) protein (385aa)
Glycine oxidase ThiO Tax=Singulisphaera acidiphila RepID=L0DKJ0_SINAD
glycine oxidase ThiO
Glycine oxidase ThiO {ECO:0000313|EMBL:AGA29355.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
anamox1_curated_scaffold_1938_14
Lysinibacillus manganicus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


15810..16013
DNA (204bp) protein (68aa)
50S ribosomal protein L28 Tax=Bacillus smithii 7_3_47FAA RepID=G9QMM5_9BACI
50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus manganicus DSM 26584.;"
anamox1_curated_scaffold_1938_15
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

16262..17350
DNA (1089bp) protein (363aa)
hypothetical protein Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI000377B6A6
oxidoreductase domain protein
Tax=RBG_13_Chloroflexi_50_21_curated
anamox1_curated_scaffold_1938_16
Cyanothece sp. PCC 8801, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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17394..18368
DNA (975bp) protein (325aa)
Glycosyl transferase family 2 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K4C4_CYAP8
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACK67830.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 8801) (Synechococcus sp. (strain PCC 8801 /; RF-1)).;"
anamox1_curated_scaffold_1938_17
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18331..21129)
DNA (2799bp) protein (933aa)
hypothetical protein Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00037064F2
alpha-mannosidase
Tax=RBG_16_Planctomycetes_64_10_curated
anamox1_curated_scaffold_1938_18
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21205..22014)
DNA (810bp) protein (270aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035C5CC0
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEE51422.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
anamox1_curated_scaffold_1938_19
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(22170..22760)
DNA (591bp) protein (197aa)
Protein with response regulator receiver domain bin=GWB2_Proteobacteria_55_19 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
two component system response regulator
Tax=RBG_13_Chloroflexi_56_8_curated
anamox1_curated_scaffold_1938_20
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23029..23304)
DNA (276bp) protein (92aa)
putative sulfurtransferase TusA (EC:2.8.1.-)
SirA family protein bin=GWC2_Deltaproteobacteria_42_51 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
anamox1_curated_scaffold_1938_21

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23543..24133
DNA (591bp) protein (197aa)
General secretion pathway protein G Tax=Dickeya dadantii (strain 3937) RepID=E0SG44_DICD3
Marine sediment metagenome DNA, contig: S03H2_S20045 {ECO:0000313|EMBL:GAH89749.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sttG; general secretion pathway protein G
anamox1_curated_scaffold_1938_22
Fibrobacter succinogenes, Fibrobacter, Fibrobacterales, Fibrobacteria, Fibrobacteres, Bacteria

Not on your lists

24299..25021
DNA (723bp) protein (241aa)
Peptidase membrane zinc metallopeptidase putative Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RNP3_FIBSS
peptidase membrane zinc metallopeptidase
Uncharacterized protein {ECO:0000313|EMBL:ADL26619.1}; species="Bacteria; Fibrobacteres; Fibrobacterales; Fibrobacteraceae; Fibrobacter.;" source="Fibrobacter succinogenes (strain ATCC 19169 / S85).;"
anamox1_curated_scaffold_1938_23
unknown

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25021..25932
DNA (912bp) protein (304aa)

This feature has no annotations

Displaying 23 items

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