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anamox1_Bacteria_33_9_curated

anamox1_Bacteria_32_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Bacteria

Displaying 45 items
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_412
Domain: Bacteria (64.18%)
67 49970 bp 32.29 1.00 93.28
anamox1_curated_scaffold_645
Domain: Bacteria (70.31%)
64 69755 bp 33.27 1.00 91.43
anamox1_curated_scaffold_500
Domain: Bacteria (75%)
60 45290 bp 31.91 1.00 88.85
anamox1_curated_scaffold_488
Domain: Bacteria (59.32%)
59 60944 bp 31.67 1.00 90.59
anamox1_curated_scaffold_621
Domain: Bacteria (76.32%)
38 42771 bp 32.54 1.00 80.16
anamox1_curated_scaffold_947
Domain: Bacteria (71.43%)
35 28011 bp 32.85 1.00 91.70
anamox1_curated_scaffold_1039
Domain: Bacteria (54.29%)
35 25576 bp 32.44 1.00 82.70
anamox1_curated_scaffold_1012
Domain: Bacteria (74.19%)
31 32678 bp 32.21 1.00 96.06
anamox1_curated_scaffold_1053
Domain: Bacteria (83.33%)
30 25694 bp 33.44 1.00 87.64
anamox1_curated_scaffold_3065
Domain: Bacteria (71.43%)
28 26011 bp 32.75 1.00 93.83
anamox1_curated_scaffold_950
Domain: Bacteria (96.43%)
28 27668 bp 30.88 1.00 95.24
anamox1_curated_scaffold_1192
Domain: Bacteria (65.38%)
26 23578 bp 31.46 1.00 94.83
anamox1_curated_scaffold_1326
Domain: Bacteria (76.92%)
26 21775 bp 32.39 1.00 96.28
anamox1_curated_scaffold_1582
Domain: Bacteria (65.22%)
23 18446 bp 31.65 1.00 87.91
anamox1_curated_scaffold_1283
Domain: Bacteria (73.68%)
19 22342 bp 31.33 1.00 96.05
anamox1_curated_scaffold_923
Domain: Bacteria (55.56%)
18 28352 bp 33.44 1.00 95.09
anamox1_curated_scaffold_2043
Domain: Bacteria (93.33%)
15 15044 bp 32.90 1.00 91.81
anamox1_curated_scaffold_1867
Domain: Bacteria (100%)
14 16052 bp 32.56 1.00 93.11
anamox1_curated_scaffold_2662
Domain: Bacteria (69.23%)
13 13572 bp 32.20 1.00 73.56
anamox1_curated_scaffold_2139
Domain: Bacteria (69.23%)
13 20177 bp 33.08 1.00 96.54
anamox1_curated_scaffold_1788
Domain: Bacteria (75%)
12 16646 bp 32.12 1.00 98.01
anamox1_curated_scaffold_1885
Domain: Bacteria (75%)
12 16005 bp 33.10 1.00 95.95
anamox1_curated_scaffold_1961
Domain: Bacteria (54.55%)
11 15512 bp 32.77 1.00 81.36
anamox1_curated_scaffold_2944
Domain: Bacteria (72.73%)
11 11057 bp 32.48 1.00 93.77
anamox1_curated_scaffold_3304
Domain: Bacteria (72.73%)
11 10057 bp 32.73 1.00 94.86
anamox1_curated_scaffold_2049
Domain: Bacteria (54.55%)
11 15612 bp 32.96 1.00 89.80
anamox1_curated_scaffold_4231
Domain: Bacteria (50%)
10 8252 bp 31.93 1.00 94.27
anamox1_curated_scaffold_4114
Domain: Bacteria (55.56%)
9 8468 bp 29.53 1.00 91.44
anamox1_curated_scaffold_8738
Domain: Bacteria (62.5%)
8 4671 bp 34.28 1.00 85.96
anamox1_curated_scaffold_4843
Domain: Bacteria (57.14%)
7 7450 bp 32.55 1.00 82.35
anamox1_curated_scaffold_4477
Domain: Bacteria (66.67%)
6 7972 bp 31.02 1.00 98.67
anamox1_curated_scaffold_8138
Domain: Bacteria (100%)
5 4949 bp 31.14 1.00 93.90
anamox1_curated_scaffold_7648
Domain: Bacteria (80%)
5 5127 bp 32.48 1.00 98.65
anamox1_curated_scaffold_6552
Domain: Bacteria (50%)
4 5702 bp 33.27 1.00 97.49
anamox1_curated_scaffold_45490 4 1602 bp 29.59 1.00 73.60
anamox1_curated_scaffold_24150
Domain: Bacteria (100%)
3 2016 bp 32.09 1.00 76.34
anamox1_curated_scaffold_11708
Domain: Bacteria (100%)
3 3579 bp 35.29 1.00 100.00
anamox1_curated_scaffold_55581
Domain: Bacteria (66.67%)
3 919 bp 30.69 1.00 88.47
anamox1_curated_scaffold_20371
Domain: Bacteria (100%)
3 2367 bp 31.39 1.00 92.02
anamox1_curated_scaffold_5623
Domain: Bacteria (100%)
3 6589 bp 33.69 1.00 98.25
anamox1_curated_scaffold_41534
Domain: Bacteria (100%)
3 1303 bp 32.46 1.00 100.84
anamox1_curated_scaffold_43725 3 1242 bp 34.70 1.00 53.14
anamox1_curated_scaffold_12625
Species: GWE1_WS6_34_7 (50%)
2 3347 bp 29.13 1.00 56.92
anamox1_curated_scaffold_57801
Species: Flavobacterium rivuli (50%)
2 953 bp 35.36 1.00 82.16
anamox1_curated_scaffold_60828 0 391 bp 24.55 1.00 0.00
Displaying 45 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.