ggKbase home page

anamox1_curated_scaffold_986

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_986_1
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..282
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5ECH5_GEOBB
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
anamox1_curated_scaffold_986_2
unknown

Not on your lists

1015..1188
DNA (174bp) protein (58aa)

This feature has no annotations

anamox1_curated_scaffold_986_3
unknown

Not on your lists

1808..2689
DNA (882bp) protein (294aa)

This feature has no annotations

anamox1_curated_scaffold_986_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2909..4525
DNA (1617bp) protein (539aa)
deoxyribodipyrimidine photo-lyase Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288CDE8
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KHA65361.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
deoxyribodipyrimidine photolyase-like protein
anamox1_curated_scaffold_986_5
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

comp(4529..6931)
DNA (2403bp) protein (801aa)
id=4259890 bin=GWC2_Clostridiales_40_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
Tax=GWC2_Clostridiales_40_7_curated
anamox1_curated_scaffold_986_6
unknown

Not on your lists

7029..7196
DNA (168bp) protein (56aa)

This feature has no annotations

anamox1_curated_scaffold_986_7
Treponema putidum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

7341..7664
DNA (324bp) protein (108aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA300-O17 RepID=UPI000376C501
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIN93807.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema putidum.;"
anamox1_curated_scaffold_986_8
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

7666..9417
DNA (1752bp) protein (584aa)
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G493_GEOUR
peptidylprolyl isomerase
Tax=GWA2_RIF03_38_11_curated
anamox1_curated_scaffold_986_9
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9464..10792)
DNA (1329bp) protein (443aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
Sensor histidine kinase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHX3_CORCM
atoS2; sensor histidine kinase
anamox1_curated_scaffold_986_10
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10873..11502)
DNA (630bp) protein (210aa)
Uncharacterized protein Tax=Planctomyces maris DSM 8797 RepID=A6C7B6_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL59302.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
anamox1_curated_scaffold_986_11
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(11507..14032)
DNA (2526bp) protein (842aa)
DEAD/DEAH box helicase; K06877 DEAD/DEAH box helicase domain-containing protein bin=CNBR_ACIDO species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
helicase family protein
Tax=BJP_IG2102_BRC1_58_13
anamox1_curated_scaffold_986_12
RLO_PLX_64_10, Bacteria

Not on your lists

comp(14041..16536)
DNA (2496bp) protein (832aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036A4503
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
anamox1_curated_scaffold_986_13
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

16863..18101
DNA (1239bp) protein (413aa)
Aspartokinase bin=GWC2_Nitrospirae_57_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
aspartate kinase
Tax=GWC2_Nitrospirae_57_13_curated
anamox1_curated_scaffold_986_14
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

18094..18663
DNA (570bp) protein (190aa)
Isochorismatase hydrolase Tax=Acetonema longum DSM 6540 RepID=F7NQ69_9FIRM
Isochorismatase hydrolase
Tax=CG_Arma_01
anamox1_curated_scaffold_986_15
Volvox carteri, Volvox, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

18688..20010
DNA (1323bp) protein (441aa)
Putative uncharacterized protein Tax=Volvox carteri RepID=D8UER7_VOLCA
Putative uncharacterized protein {ECO:0000313|EMBL:EFJ41819.1}; species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox.;" source="Volvox carteri (Green alga).;"
hypothetical protein
anamox1_curated_scaffold_986_16
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19998..20537)
DNA (540bp) protein (180aa)
Uncharacterized protein Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GUQ4_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EKQ71151.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
hypothetical protein
anamox1_curated_scaffold_986_17
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20534..20740)
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Clostridium sp. BNL1100 RepID=H2JDX0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY65299.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
anamox1_curated_scaffold_986_18
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(20737..21639)
DNA (903bp) protein (301aa)
Band 7 protein Tax=Clostridium termitidis CT1112 RepID=S0FI25_9CLOT
hypothetical protein
Tax=BJP_IG2102_BRC1_58_13
anamox1_curated_scaffold_986_19
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21758..22513)
DNA (756bp) protein (252aa)
TGL2; esterase/lipase/thioesterase family protein (EC:3.1.1.3)
Esterase/lipase/thioesterase family active site {ECO:0000313|EMBL:CAD84688.1}; EC=3.1.1.3 {ECO:0000313|EMBL:CAD84688.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
Esterase/lipase/thioesterase family active site Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82WB6_NITEU
anamox1_curated_scaffold_986_20
CG_Omnitr_06, Omnitrophica, Bacteria

Not on your lists

comp(22510..22902)
DNA (393bp) protein (131aa)
hypothetical protein Tax=Lewinella persica RepID=UPI00037FCBE6
response regulator PleD (with diguanylate cyclase and response regulator receiver domains) (fragment)
Tax=CG_Omnitr_06
anamox1_curated_scaffold_986_21
unknown

Not on your lists

comp(22983..24044)
DNA (1062bp) protein (354aa)

This feature has no annotations

anamox1_curated_scaffold_986_22
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24046..24954)
DNA (909bp) protein (303aa)
hypothetical protein Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B30BD7
type 11 methyltransferase
Type 11 methyltransferase {ECO:0000313|EMBL:AET57609.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus terrae (strain HPL-003).;"
anamox1_curated_scaffold_986_23
Caldicellulosiruptor lactoaceticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25219..26688)
DNA (1470bp) protein (490aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor lactoaceticus 6A.;"
Inosine-5'-monophosphate dehydrogenase Tax=Caldicellulosiruptor lactoaceticus 6A RepID=G2PVW6_9FIRM
inosine-5'-monophosphate dehydrogenase
anamox1_curated_scaffold_986_24
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26808..30998)
DNA (4191bp) protein (1397aa)
Sensor histidine kinase response regulator, DUF3365, PAS and PAS domain-containing, heme-binding Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AMP6_GEOSK
sensor histidine kinase response regulator
Histidine kinase {ECO:0000313|EMBL:AJY69082.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
anamox1_curated_scaffold_986_25
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists

31182..31991
DNA (810bp) protein (270aa)
Site-specific DNA-methyltransferase (Adenine-specific) bin=GWC2_ACD39_50_8 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_ACD39_50_8 organism_group=ACD39
DNA methylase N-4/N-6 domain-containing protein
Tax=RBG_13_Chloroflexi_52_14_curated
anamox1_curated_scaffold_986_26
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

32042..32968
DNA (927bp) protein (309aa)
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
malate dehydrogenase
Tax=BJP_IG2158_Zixibacteria_48_33
anamox1_curated_scaffold_986_27
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

33039..34007
DNA (969bp) protein (323aa)
Glycosyl transferase family 2 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQ28_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EHO42279.1}; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
glycosyl transferase family protein
anamox1_curated_scaffold_986_28
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

Not on your lists

comp(34047..35156)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_38_69 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
hypothetical protein
Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
anamox1_curated_scaffold_986_29
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


35385..35819
DNA (435bp) protein (145aa)
50S ribosomal protein L13 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=RL13_CHLAD
rplM; 50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
anamox1_curated_scaffold_986_30
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists


35839..36234
DNA (396bp) protein (132aa)
rpsI; 30S ribosomal protein S9 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rspI; ribosomal protein S9
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
Displaying items 1-30 of 38 in total

View Taxonomy