ggKbase home page

anamox1_curated_scaffold_562

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_562_1
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2209)
DNA (2208bp) protein (736aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
pnp; polyribonucleotide nucleotidyltransferase Pnp (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIQ3_9BURK
anamox1_curated_scaffold_562_2
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2405..2674)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) PF6_RUBGI">RepID=I0HPF6_RUBGI
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_3
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3034..3477
DNA (444bp) protein (148aa)
Molecular chaperone-like protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SFL9_METPP
molecular chaperone-like protein
Molecular chaperone-like protein {ECO:0000313|EMBL:ABM94358.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
anamox1_curated_scaffold_562_4
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3517..4548)
DNA (1032bp) protein (344aa)
UGMP family protein Tax=Caldimonas manganoxidans RepID=UPI00037B7A8F
gcp; O-sialoglycoprotein endopeptidase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_562_5
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4558..5145)
DNA (588bp) protein (196aa)
Recombination protein RecR Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUF0_RUBGI
recR; recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_6
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5179..5505)
DNA (327bp) protein (109aa)
Nucleoid-associated protein RGE_32990 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUF1_RUBGI
hypothetical protein
Nucleoid-associated protein RGE_32990 {ECO:0000256|HAMAP-Rule:MF_00274}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_7
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5606..7546)
DNA (1941bp) protein (647aa)
dnaX; DNA polymerase III gamma/tau subunit DnaX (EC:2.7.7.7)
DNA polymerase III gamma/tau subunit DnaX {ECO:0000313|EMBL:BAL96639.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAL96639.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
DNA polymerase III gamma/tau subunit DnaX Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUF2_RUBGI
anamox1_curated_scaffold_562_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7712..8851
DNA (1140bp) protein (380aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y1E5_LEPCP
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_562_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9055..9600)
DNA (546bp) protein (182aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
2',5' RNA ligase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y753_NITMU
2',5' RNA ligase
anamox1_curated_scaffold_562_10
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9597..11300)
DNA (1704bp) protein (568aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAL96646.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAL96646.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Putative serine/threonine protein kinase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUF9_RUBGI
anamox1_curated_scaffold_562_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11683..12012
DNA (330bp) protein (110aa)
Thioredoxin Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WI89_9BURK
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
thioredoxin 1
anamox1_curated_scaffold_562_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12267..13529
DNA (1263bp) protein (421aa)
rho; transcription termination factor Rho (EC:3.6.4.-)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Transcription termination factor Rho Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUG2_RUBGI
anamox1_curated_scaffold_562_13
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13635..13889
DNA (255bp) protein (85aa)
50S ribosomal protein L31 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQI4_9BURK
rpmE; 50S ribosomal protein L31 type B RpmE
50S ribosomal protein L31 {ECO:0000256|RuleBase:RU000564}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_562_14
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14024..14554
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5U1_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07321.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
anamox1_curated_scaffold_562_15
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14551..14769
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DUF5_THIND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA33229.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
anamox1_curated_scaffold_562_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14932..17823
DNA (2892bp) protein (964aa)
Putative monovalent cation/H+ antiporter subunit A {ECO:0000313|EMBL:EIK89217.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EIK89217.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phaAB; putative K(+)/H(+) antiporter subunit A/B PhaAB (EC:1.6.99.5)
Putative monovalent cation/H+ antiporter subunit A Tax=Hydrogenophaga sp. PBC RepID=I4MJ27_9BURK
anamox1_curated_scaffold_562_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17823..18176
DNA (354bp) protein (118aa)
Putative monovalent cation/H+ antiporter subunit C Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSX5_9BURK
Putative monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:EGJ11443.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
phaC; putative K+/H+ antiporter subunit C PhaC
anamox1_curated_scaffold_562_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18173..19858
DNA (1686bp) protein (562aa)
Putative monovalent cation/H+ antiporter subunit D Tax=Hydrogenophaga sp. PBC RepID=I4MJ25_9BURK
Putative monovalent cation/H+ antiporter subunit D {ECO:0000313|EMBL:EIK89215.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phaD; putative K+/H+ antiporter subunit D PhaD
anamox1_curated_scaffold_562_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19855..20343
DNA (489bp) protein (163aa)
Putative monovalent cation/H+ antiporter subunit E Tax=Hydrogenophaga sp. PBC RepID=I4MJ24_9BURK
phaE; Potassium efflux system protein PhaE
Tax=BJP_08E140C01_Burkholderiales_65_30
anamox1_curated_scaffold_562_20
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20340..20618
DNA (279bp) protein (93aa)
Putative monovalent cation/H+ antiporter subunit F Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTS9_9BURK
Putative monovalent cation/H+ antiporter subunit F {ECO:0000313|EMBL:EGI76958.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
phaF; pH adaptation potassium efflux system protein F
anamox1_curated_scaffold_562_21
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20615..20950
DNA (336bp) protein (112aa)
Potassium efflux system protein Tax=gamma proteobacterium HdN1 RepID=E1VN84_9GAMM
phaG; potassium efflux system protein
Potassium efflux system protein {ECO:0000313|EMBL:CBL46276.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
anamox1_curated_scaffold_562_22
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20956..21675)
DNA (720bp) protein (240aa)
hypothetical protein Tax=Ahrensia kielensis RepID=UPI00037CF67E
high-affinity branched-chain amino acidtransport ATP-binding protein livF
Tax=RBG_16_Betaproteobacteria_64_18_curated
anamox1_curated_scaffold_562_23
bacterium YEK0313, Bacteria

Not on your lists

comp(21668..22411)
DNA (744bp) protein (248aa)
ABC transporter Tax=Bradyrhizobium japonicum RepID=UPI000367A134
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEJ15233.1}; species="Bacteria.;" source="bacterium YEK0313.;"
high-affinity branched-chain amino acid transporter ATP-binding protein LivG
anamox1_curated_scaffold_562_24
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22408..23349)
DNA (942bp) protein (314aa)
hypothetical protein Tax=Pseudaminobacter salicylatoxidans RepID=UPI000308A6D1
ABC transporter permease {ECO:0000313|EMBL:KJE34866.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
inner-membrane translocator
anamox1_curated_scaffold_562_25
bacterium YEK0313, Bacteria

Not on your lists

comp(23346..24221)
DNA (876bp) protein (292aa)
Branched-chain amino acid ABC transporter, permease protein Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWX1_POLGS
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ15235.1}; species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter permease
anamox1_curated_scaffold_562_26
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24260..25477)
DNA (1218bp) protein (406aa)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI000382D638
branched chain amino acid ABC transporter substrate-binding protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
anamox1_curated_scaffold_562_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25570..26328)
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWW6_POLGS
short-chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADZ71543.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
anamox1_curated_scaffold_562_28
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26467..27918)
DNA (1452bp) protein (484aa)
Aldehyde dehydrogenase Tax=Burkholderia gladioli (strain BSR3) RepID=F2LM15_BURGS
acyl-CoA reductase family protein
Acyl-CoA reductase family protein {ECO:0000313|EMBL:KGC14515.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
anamox1_curated_scaffold_562_29
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28102..28941
DNA (840bp) protein (280aa)
AraC family transcriptional regulator Tax=Burkholderia gladioli (strain BSR3) RepID=F2LM16_BURGS
Uncharacterized protein {ECO:0000313|EMBL:KGE07759.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
AraC family transcriptional regulator
anamox1_curated_scaffold_562_30
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28923..29864)
DNA (942bp) protein (314aa)
Universal stress protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSX3_9BURK
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 143 in total

View Taxonomy