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anamox1_curated_scaffold_547

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_547_1
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..433)
DNA (432bp) protein (144aa)
RNA polymerase sigma factor Tax=Methylocystis sp. (strain SC2) RepID=I4EB06_METSZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
ECF-family RNA polymerase sigma factor
anamox1_curated_scaffold_547_2
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(581..1282)
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Methylocystis sp. (strain SC2) RepID=I4EB07_METSZ
Uncharacterized protein {ECO:0000313|EMBL:CCD32163.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
hypothetical protein
anamox1_curated_scaffold_547_3
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1669..2103
DNA (435bp) protein (145aa)
Putative uncharacterized protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7L4_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB36162.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
anamox1_curated_scaffold_547_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2170..2781
DNA (612bp) protein (204aa)
thrH; phosphoserine--homoserine phosphotransferase ThrH (EC:3.1.3.3)
Phosphoserine--homoserine phosphotransferase ThrH {ECO:0000313|EMBL:BAL96634.1}; EC=3.1.3.3 {ECO:0000313|EMBL:BAL96634.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Phosphoserine--homoserine phosphotransferase ThrH Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUE7_RUBGI
anamox1_curated_scaffold_547_trna_6
unknown

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comp(3028..3117)
DNA (90bp)
transferRNA Ser
anamox1_curated_scaffold_547_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3172..4449)
DNA (1278bp) protein (426aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
lysC; aspartokinase LysC (EC:2.7.2.4)
Aspartokinase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQX7_9BURK
anamox1_curated_scaffold_547_6
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4566..5873)
DNA (1308bp) protein (436aa)
tilS; tRNA(Ile)-lysidine synthase TilS (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
tRNA(Ile)-lysidine synthase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU13_RUBGI
anamox1_curated_scaffold_547_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5906..6877)
DNA (972bp) protein (324aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit AccA (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQX5_9BURK
anamox1_curated_scaffold_547_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6877..7590)
DNA (714bp) protein (238aa)
alkA; DNA-3-methyladenine glycosylase II AlkA (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II AlkA Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU15_RUBGI
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_547_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7611..9014)
DNA (1404bp) protein (468aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQX3_9BURK
anamox1_curated_scaffold_547_10
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9161..9736
DNA (576bp) protein (192aa)
ppiA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) PpiA (EC:5.2.1.8)
peptidyl-prolyl cis-trans isomerase Tax=Ideonella sp. B508-1 RepID=UPI00034691B6
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_547_11
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9739..10239
DNA (501bp) protein (167aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) PpiB (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQX0_9BURK
anamox1_curated_scaffold_547_12
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10280..11113
DNA (834bp) protein (278aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
lpxH; UDP-2,3-diacylglucosamine hydrolase LpxH (EC:3.6.1.-)
UDP-2,3-diacylglucosamine hydrolase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQW9_9BURK
anamox1_curated_scaffold_547_13
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11122..11898
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU21_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96508.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_547_14
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11978..12226
DNA (249bp) protein (83aa)
Uncharacterized protein Tax=Thauera phenylacetica B4P RepID=N6Z1B8_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:CDS50315.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
anamox1_curated_scaffold_547_15
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12227..12640
DNA (414bp) protein (138aa)
PilT domain-containing protein Tax=Thauera phenylacetica B4P RepID=N6ZZU7_9RHOO
PIN domain protein {ECO:0000313|EMBL:KIN91527.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
PilT domain-containing protein
anamox1_curated_scaffold_547_16
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12764..15073)
DNA (2310bp) protein (770aa)
clpA; ATP-dependent Clp protease (EC:3.4.21.92)
ATP-dependent Clp protease, ATP-binding subunit clpA Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQW7_9BURK
ATP-dependent Clp protease, ATP-binding subunit clpA {ECO:0000313|EMBL:EGJ10735.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_547_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15070..15426)
DNA (357bp) protein (119aa)
ATP-dependent Clp protease adapter protein ClpS Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU23_RUBGI
clpS; ATP-dependent Clp protease adapter protein ClpS
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_547_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15763..15996
DNA (234bp) protein (78aa)
Cold shock protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU24_RUBGI
csp; cold shock protein
Cold shock protein {ECO:0000313|EMBL:BAL96511.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_547_19
unknown

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comp(16079..16882)
DNA (804bp) protein (268aa)
von Willebrand factor type A
anamox1_curated_scaffold_547_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17246..20020
DNA (2775bp) protein (925aa)
TPR repeat protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HL26_RUBGI
TPR repeat protein
TPR repeat protein {ECO:0000313|EMBL:BAL93713.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_547_21
unknown

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comp(20102..20389)
DNA (288bp) protein (96aa)

This feature has no annotations

anamox1_curated_scaffold_547_22
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20422..21318)
DNA (897bp) protein (299aa)
Tyrosine recombinase XerD Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRZ3_9BURK
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
xerD; tyrosine recombinase XerD
anamox1_curated_scaffold_547_23
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21405..22316
DNA (912bp) protein (304aa)
transporter Tax=Ideonella sp. B508-1 RepID=UPI0003B67FB5
Auxin efflux carrier {ECO:0000313|EMBL:EGJ11108.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
anamox1_curated_scaffold_547_24
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22402..23484)
DNA (1083bp) protein (361aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Epoxyqueuosine reductase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HP85_RUBGI
putative 4Fe-4S cluster-binding ferredoxin protein
anamox1_curated_scaffold_547_25
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23512..23985
DNA (474bp) protein (158aa)
Uncharacterized protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRY8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ11106.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
putative ATPase
anamox1_curated_scaffold_547_26
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23982..25325
DNA (1344bp) protein (448aa)
amiC; N-acetylmuramoyl-L-alanine amidase AmiC (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase AmiC {ECO:0000313|EMBL:BAL94820.1}; EC=3.5.1.28 {ECO:0000313|EMBL:BAL94820.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
N-acetylmuramoyl-L-alanine amidase AmiC Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HP83_RUBGI
anamox1_curated_scaffold_547_27
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25273..28584)
DNA (3312bp) protein (1104aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
dnaE; error-prone DNA polymerase DnaE (EC:2.7.7.7)
Error-prone DNA polymerase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNR6_RUBGI
anamox1_curated_scaffold_547_trna_5
unknown

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comp(28683..28768)
DNA (86bp)
transferRNA Leu
anamox1_curated_scaffold_547_trna_4
unknown

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comp(28879..28949)
DNA (71bp)
transferRNA Cys
Displaying items 1-30 of 107 in total

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