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anamox2_curated_scaffold_9

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Displaying items 1-30 of 256 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox2_curated_scaffold_9_1
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..492
DNA (492bp) protein (164aa)
Putative transposase Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TIJ1_PARBH
Uncharacterized protein {ECO:0000313|EMBL:KJC50914.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
transposase
anamox2_curated_scaffold_9_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(887..2824)
DNA (1938bp) protein (646aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
UPI0003CFCF7A related cluster Tax=unknown RepID=UPI0003CFCF7A
anamox2_curated_scaffold_9_3
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2932..4302)
DNA (1371bp) protein (457aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
UPI0003CEA5EE related cluster Tax=unknown RepID=UPI0003CEA5EE
tRNA(Ile)-lysidine synthetase
anamox2_curated_scaffold_9_4
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4296..5408)
DNA (1113bp) protein (371aa)
UPI0003CEAD90 related cluster Tax=unknown RepID=UPI0003CEAD90
Tol-pal system protein YbgF {ECO:0000313|EMBL:ESY94045.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
tol-pal system protein YbgF
anamox2_curated_scaffold_9_5
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5603..6112)
DNA (510bp) protein (170aa)
Peptidoglycan-associated lipoprotein Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YGR9_MESOW
peptidoglycan-associated lipoprotein
Membrane protein {ECO:0000313|EMBL:ESY67283.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
anamox2_curated_scaffold_9_6
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6349..7662)
DNA (1314bp) protein (438aa)
Protein TolB Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YGR8_MESOW
Tol-Pal system beta propeller repeat protein TolB
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
anamox2_curated_scaffold_9_7
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7691..8848)
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FKL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX76658.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
TonB family protein
anamox2_curated_scaffold_9_8
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8851..9309)
DNA (459bp) protein (153aa)
UPI0003CE5FB3 related cluster Tax=unknown RepID=UPI0003CE5FB3
Protein TolR {ECO:0000313|EMBL:CDX42672.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
protein TolR
anamox2_curated_scaffold_9_9
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9319..10032)
DNA (714bp) protein (238aa)
Biopolymer transporter ExbB Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FK02_9RHIZ
Biopolymer transporter ExbB {ECO:0000313|EMBL:ESX76660.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
TolQ protein
anamox2_curated_scaffold_9_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10390..10725
DNA (336bp) protein (112aa)
Putative uncharacterized protein Tax=Rhizobium etli CNPAF512 RepID=F2AHE3_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE56085.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
TonB-dependent receptor
anamox2_curated_scaffold_9_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10617..11396)
DNA (780bp) protein (260aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TIY6_MESCW
anamox2_curated_scaffold_9_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11410..13245)
DNA (1836bp) protein (612aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like Tax=Pantholops hodgsonii RepID=UPI0003C177FE
succinate dehydrogenase, flavoprotein subunit
anamox2_curated_scaffold_9_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13249..13641)
DNA (393bp) protein (131aa)
Succinate dehydrogenase, hydrophobic membrane anchor protein Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9S1_9RHIZ
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:EHH11519.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
succinate dehydrogenase, hydrophobic membrane anchor protein
anamox2_curated_scaffold_9_14
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13644..13976)
DNA (333bp) protein (111aa)
PREDICTED: succinate dehydrogenase cytochrome b560 subunit-like Tax=Pantholops hodgsonii RepID=UPI0003C19176
succinate dehydrogenase membrane anchor subunit
Succinate dehydrogenase membrane anchor subunit {ECO:0000313|EMBL:BAB50963.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
anamox2_curated_scaffold_9_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14410..15321)
DNA (912bp) protein (304aa)
RNA polymerase sigma 70 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EB63DE
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
RNA polymerase sigma-32 subunit RpoH
anamox2_curated_scaffold_9_16
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15507..16529)
DNA (1023bp) protein (341aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
UPI0003CF8F0A related cluster Tax=unknown RepID=UPI0003CF8F0A
pseudouridine synthase
anamox2_curated_scaffold_9_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16604..16987
DNA (384bp) protein (128aa)
Putative fimbrial subunit PilA Tax=Mesorhizobium sp. STM 4661 RepID=M5F4K0_9RHIZ
Putative fimbrial subunit PilA {ECO:0000313|EMBL:CCV11093.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
putative fimbrial subunit PilA
anamox2_curated_scaffold_9_trna_1
unknown

Not on your lists

17145..17216
DNA (72bp)
transferRNA Glu
anamox2_curated_scaffold_9_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17420..18196)
DNA (777bp) protein (259aa)
ABC transporter Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ECB63A
ATP-binding protein {ECO:0000313|EMBL:EZQ15557.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ABC transporter
anamox2_curated_scaffold_9_19
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18198..18860)
DNA (663bp) protein (221aa)
amino acid ABC transporter Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E60B54
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EFM60115.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
polar amino acid ABC transporter inner membrane subunit
anamox2_curated_scaffold_9_20
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18860..19507)
DNA (648bp) protein (216aa)
amino acid ABC transporter Tax=Pseudaminobacter salicylatoxidans RepID=UPI000310E5A9
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EEQ94165.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
polar amino acid ABC transporter inner membrane subunit
anamox2_curated_scaffold_9_21
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19565..20383)
DNA (819bp) protein (273aa)
Extracellular solute-binding protein Tax=Ochrobactrum intermedium RepID=M5JT47_9RHIZ
Extracellular solute-binding protein {ECO:0000313|EMBL:ELT46589.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
extracellular solute-binding protein
anamox2_curated_scaffold_9_22
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20822..22417)
DNA (1596bp) protein (532aa)
Urocanate hydratase {ECO:0000255|HAMAP-Rule:MF_00577}; Short=Urocanase {ECO:0000255|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000255|HAMAP-Rule:MF_00577};; Imidazolonepropionate hydrolase {ECO:0000255|HAMAP-Rule:MF_00577}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
Urocanate hydratase Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=HUTU_AGRVS
hutU; urocanate hydratase
anamox2_curated_scaffold_9_23
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22505..23668)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase Tax=Brucella RepID=E0DPN5_9RHIZ
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EXL09398.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
butyryl-CoA dehydrogenase
anamox2_curated_scaffold_9_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23655..24839)
DNA (1185bp) protein (395aa)
L-carnitine dehydratase/bile acid-inducible protein F (EC:2.8.3.16)
acyl-CoA transferase Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030E7350
Acyl-CoA transferase {ECO:0000313|EMBL:EXL09399.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
anamox2_curated_scaffold_9_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25272..26039
DNA (768bp) protein (256aa)
GntR family transcriptional regulator Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F2263C
GntR family transcriptional regulator {ECO:0000313|EMBL:EXL09400.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
UbiC transcription regulator-associated domain-containing protein
anamox2_curated_scaffold_9_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26064..26855)
DNA (792bp) protein (264aa)
hypothetical protein Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003760430
Uncharacterized protein {ECO:0000313|EMBL:KGD95144.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
anamox2_curated_scaffold_9_27
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26894..28351)
DNA (1458bp) protein (486aa)
Prolidase {ECO:0000313|EMBL:EGF94622.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EGF94622.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Prolidase Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXX8_BREDI
hydrolase
anamox2_curated_scaffold_9_28
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28675..29568)
DNA (894bp) protein (298aa)
UPI0003CFE4A0 related cluster Tax=unknown RepID=UPI0003CFE4A0
LuxR family transcriptional regulator {ECO:0000313|EMBL:EXL10598.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
putative LuxR family transcriptional regulator
anamox2_curated_scaffold_9_29
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30092..31480
DNA (1389bp) protein (463aa)
UPI0003CFDD27 related cluster Tax=unknown RepID=UPI0003CFDD27
Uncharacterized protein {ECO:0000313|EMBL:EZQ17831.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
Displaying items 1-30 of 256 in total

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