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anamox2_curated_scaffold_1113

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox2_curated_scaffold_1113_1
Bacteroides sp. CAG:754, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..293)
DNA (291bp) protein (97aa)
Two-component system sensor histidine kinase/response regulator Tax=Bacteroides sp. CAG:754 RepID=R6D5R3_9BACE
Two-component system sensor histidine kinase/response regulator {ECO:0000313|EMBL:CDA83833.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:754.;"
histidine kinase
anamox2_curated_scaffold_1113_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(317..2254)
DNA (1938bp) protein (646aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
1-deoxy-D-xylulose-5-phosphate synthase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL89_NIAKG
1-deoxy-D-xylulose-5-phosphate synthase
anamox2_curated_scaffold_1113_3
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2464..3519
DNA (1056bp) protein (352aa)
Putative signal transduction histidine kinase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL88_NIAKG
Histidine kinase {ECO:0000313|EMBL:KIC89157.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative signal transduction histidine kinase
anamox2_curated_scaffold_1113_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3533..4261
DNA (729bp) protein (243aa)
Two component transcriptional regulator, LytTR family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL87_NIAKG
Putative two-component response regulator {ECO:0000313|EMBL:GAO41727.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
LytTR family two component transcriptional regulator
anamox2_curated_scaffold_1113_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4388..5710
DNA (1323bp) protein (441aa)
Putative aminopeptidase Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KS77_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KIC96126.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
putative aminopeptidase
anamox2_curated_scaffold_1113_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(5707..6462)
DNA (756bp) protein (252aa)
geranylgeranylglyceryl phosphate synthase Tax=Segetibacter koreensis RepID=UPI00037CAC12
geranylgeranylglyceryl phosphate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
anamox2_curated_scaffold_1113_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7019..10399
DNA (3381bp) protein (1127aa)
Ribonucleoside-diphosphate reductase class II {ECO:0000313|EMBL:AEW01917.1}; EC=1.17.4.- {ECO:0000313|EMBL:AEW01917.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Ribonucleoside-diphosphate reductase class II Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL76_NIAKG
ribonucleoside-diphosphate reductase class II
anamox2_curated_scaffold_1113_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10762..10905)
DNA (144bp) protein (48aa)
Uncharacterized protein Tax=Niabella soli DSM 19437 RepID=H1NJ81_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17052.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anamox2_curated_scaffold_1113_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11071..12312)
DNA (1242bp) protein (414aa)
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQE6_NIAKG
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
anamox2_curated_scaffold_1113_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12458..13102)
DNA (645bp) protein (215aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ATP-dependent Clp protease proteolytic subunit Tax=Niabella soli DSM 19437 RepID=H1NJ79_9SPHI
Clp protease proteolytic subunit ClpP
anamox2_curated_scaffold_1113_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13130..13822)
DNA (693bp) protein (231aa)
ATP-dependent Clp protease ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ATP-dependent Clp protease ClpP Tax=Niabella aurantiaca RepID=UPI00035C7C95
anamox2_curated_scaffold_1113_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13980..15356)
DNA (1377bp) protein (459aa)
trigger factor Tax=Niabella aurantiaca RepID=UPI00036A4FDF
trigger factor
Trigger factor {ECO:0000313|EMBL:AHF15173.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anamox2_curated_scaffold_1113_trna_1
unknown

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comp(15410..15491)
DNA (82bp)
transferRNA Leu
anamox2_curated_scaffold_1113_13
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15759..18002
DNA (2244bp) protein (748aa)
(P)ppGpp synthetase I, SpoT/RelA Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJT8_NIAKG
(P)ppGpp synthase {ECO:0000313|EMBL:GAO45016.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
(p)ppGpp synthetase I SpoT/RelA
anamox2_curated_scaffold_1113_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18124..19452
DNA (1329bp) protein (443aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
adenylosuccinate synthetase Tax=Segetibacter koreensis RepID=UPI00037AB03D
adenylosuccinate synthetase
anamox2_curated_scaffold_1113_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19544..19969
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJT6_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01834.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
anamox2_curated_scaffold_1113_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20131..21570)
DNA (1440bp) protein (480aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Glutamyl-tRNA(Gln) amidotransferase subunit A Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQE2_CHIPD
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
anamox2_curated_scaffold_1113_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21621..21824)
DNA (204bp) protein (68aa)
preprotein translocase Tax=Niabella aurantiaca RepID=UPI000363C61B
preprotein translocase
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anamox2_curated_scaffold_1113_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(21968..22342)
DNA (375bp) protein (125aa)
50S ribosomal protein L19 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJT1_NIAKG
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
anamox2_curated_scaffold_1113_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22499..24064)
DNA (1566bp) protein (522aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Ribonuclease Y Tax=Niabella soli DSM 19437 RepID=H1NNW9_9SPHI
ribonuclease
anamox2_curated_scaffold_1113_20
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24176..24562)
DNA (387bp) protein (129aa)
Putative transposase Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZLV6_9BACT
Putative transposase {ECO:0000313|EMBL:EON75076.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
Displaying 21 items

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