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anamox2_curated_scaffold_3855

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox2_curated_scaffold_3855_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..359
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Rhodanobacter sp. 115 RepID=I4VK60_9GAMM
SMR domain protein {ECO:0000313|EMBL:KJV37100.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
SMR domain protein
anamox2_curated_scaffold_3855_2
unknown

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comp(580..1626)
DNA (1047bp) protein (349aa)

This feature has no annotations

anamox2_curated_scaffold_3855_3
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1936..3078)
DNA (1143bp) protein (381aa)
Disease resistance protein Tax=Beggiatoa sp. PS RepID=A7BW63_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56969.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
anamox2_curated_scaffold_3855_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3396..4406)
DNA (1011bp) protein (337aa)
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA pseudouridine synthase D Tax=Dyella ginsengisoli RepID=UPI00034A72C8
tRNA pseudouridine synthase, TruD family
anamox2_curated_scaffold_3855_5
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4403..5023)
DNA (621bp) protein (207aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Arenimonas oryziterrae RepID=UPI0003B4AD13
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
anamox2_curated_scaffold_3855_6
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5147..5485)
DNA (339bp) protein (113aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00036E1BFD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
anamox2_curated_scaffold_3855_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5841..6155)
DNA (315bp) protein (105aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003665FD3
septum formation initiator
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
anamox2_curated_scaffold_3855_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6168..7463)
DNA (1296bp) protein (432aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
enolase (EC:4.2.1.11)
enolase Tax=Rudaea cellulosilytica RepID=UPI000382BFE4
anamox2_curated_scaffold_3855_9
unknown

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comp(7480..7704)
DNA (225bp) protein (75aa)

This feature has no annotations

anamox2_curated_scaffold_3855_10
R_Proteobacteria_53_8, Proteobacteria, Bacteria

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comp(7787..8209)
DNA (423bp) protein (141aa)
PilT protein domain protein Tax=Thauera RepID=C4KA60_THASP
PilT protein domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
anamox2_curated_scaffold_3855_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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8656..8844
DNA (189bp) protein (63aa)
id=12550956 bin=BDI tax=BDI organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
anamox2_curated_scaffold_3855_12

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comp(9344..9475)
DNA (132bp) protein (44aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthetase Tax=Rudaea cellulosilytica RepID=UPI00037E9101
CTP synthetase {ECO:0000313|EMBL:EQD62212.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 12 items

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