ggKbase home page

anamox2_curated_scaffold_2200

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox2_curated_scaffold_2200_1
unknown

Not on your lists

comp(3..71)
DNA (69bp) protein (23aa)

This feature has no annotations

anamox2_curated_scaffold_2200_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(166..432)
DNA (267bp) protein (89aa)
hypothetical protein Tax=Xanthomonas RepID=UPI000262B0FC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX13519.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
anamox2_curated_scaffold_2200_trna_1
unknown

Not on your lists

587..659
DNA (73bp)
transferRNA Gly
anamox2_curated_scaffold_2200_trna_2
unknown

Not on your lists

804..874
DNA (71bp)
transferRNA Cys
anamox2_curated_scaffold_2200_trna_3
unknown

Not on your lists

932..1015
DNA (84bp)
transferRNA Leu
anamox2_curated_scaffold_2200_3
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1033..1593)
DNA (561bp) protein (187aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00036ADA8D
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KJV36185.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
anamox2_curated_scaffold_2200_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1603..3435)
DNA (1833bp) protein (611aa)
excinuclease ABC subunit C Tax=Dyella ginsengisoli RepID=UPI0003470A4E
Excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
anamox2_curated_scaffold_2200_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3671..4561
DNA (891bp) protein (297aa)
Uncharacterized protein Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D2H4_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU77326.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
anamox2_curated_scaffold_2200_6
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4589..5053)
DNA (465bp) protein (155aa)
protein tyrosine phosphatase (EC:3.1.3.2)
Low molecular weight phosphotyrosine protein phosphatase Tax=Rhodobacter sp. CACIA14H1 RepID=V7EID7_9RHOB
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:ESW60014.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
anamox2_curated_scaffold_2200_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5050..6165)
DNA (1116bp) protein (372aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-deoxy-manno-octulosonate cytidylyltransferase Tax=Dyella ginsengisoli RepID=UPI000344DB94
3-deoxy-D-manno-octulosonate cytidylyltransferase
anamox2_curated_scaffold_2200_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6397..6765
DNA (369bp) protein (123aa)
Uncharacterized protein Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD96_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97437.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
anamox2_curated_scaffold_2200_9
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

7028..7732
DNA (705bp) protein (235aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003829158
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83602.1}; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
anamox2_curated_scaffold_2200_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7803..8525
DNA (723bp) protein (241aa)
RNA polymerase subunit sigma-24 Tax=Schlesneria paludicola RepID=UPI00029A77F8
Uncharacterized protein {ECO:0000313|EMBL:AKC86166.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
anamox2_curated_scaffold_2200_11
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8527..12909
DNA (4383bp) protein (1461aa)
WD40 repeat-containing protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DP20_SINAD
Uncharacterized protein {ECO:0000313|EMBL:KFN50767.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
WD40 repeat-containing protein
anamox2_curated_scaffold_2200_12
unknown

Not on your lists

12872..13882
DNA (1011bp) protein (337aa)

This feature has no annotations

anamox2_curated_scaffold_2200_13
unknown

Not on your lists

13927..14430
DNA (504bp) protein (168aa)

This feature has no annotations

anamox2_curated_scaffold_2200_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14488..15726)
DNA (1239bp) protein (413aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Tax=Rudaea cellulosilytica RepID=UPI00037E10EF
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
anamox2_curated_scaffold_2200_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15834..17237
DNA (1404bp) protein (468aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4Y5T9_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP38283.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
anamox2_curated_scaffold_2200_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17401..18756
DNA (1356bp) protein (452aa)
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Exodeoxyribonuclease 7 large subunit Tax=Rhodanobacter denitrificans RepID=M4NEN3_9GAMM
anamox2_curated_scaffold_2200_17

Not on your lists

19338..20276
DNA (939bp) protein (313aa)
Aldehyde dehydrogenase domain protein {ECO:0000313|EMBL:EQD36687.1}; EC=1.-.-.- {ECO:0000313|EMBL:EQD36687.1};; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Aldehyde dehydrogenase domain protein (Fragment) Tax=mine drainage metagenome RepID=T0YXL8_9ZZZZ
NAD-dependent aldehyde dehydrogenase
anamox2_curated_scaffold_2200_18
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20321..20494)
DNA (174bp) protein (58aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003605253
Diacylglycerol O-acyltransferase {ECO:0000313|EMBL:KGQ20278.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
Displaying 21 items

View Taxonomy