ggKbase home page

anamox3_curated_scaffold_1283

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox3_curated_scaffold_1283_1
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

304..3003
DNA (2700bp) protein (900aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1ZM95_9BACT
type III restriction enzyme, res subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
anamox3_curated_scaffold_1283_2
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

3006..4106
DNA (1101bp) protein (367aa)
Virulence protein-like protein Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YXG2_DESAF
virulence protein-like protein
Tax=RBG_16_Planctomycetes_59_8_curated
anamox3_curated_scaffold_1283_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

4046..6418
DNA (2373bp) protein (791aa)
adenine-specific DNA methyltransferase (EC:2.1.1.72)
Adenine specific DNA-methyltransferase Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIT1_THIDA
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
anamox3_curated_scaffold_1283_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6885..7499
DNA (615bp) protein (205aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Alkylhydroperoxidase like protein, AhpD family Tax=Pedosphaera parvula Ellin514 RepID=B9XN82_9BACT
alkylhydroperoxidase AhpD family core domain protein
anamox3_curated_scaffold_1283_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8062..9234
DNA (1173bp) protein (391aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transcription termination factor Rho Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000369A13A
transcription termination factor Rho
anamox3_curated_scaffold_1283_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9542..10651)
DNA (1110bp) protein (370aa)
Amidohydrolase Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z5_9BACT
Amidohydrolase {ECO:0000313|EMBL:EDY20007.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ssnA; Cytosine deaminase or related metal-dependent hydrolase
anamox3_curated_scaffold_1283_7
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists


comp(10744..11154)
DNA (411bp) protein (137aa)
50S ribosomal protein L17 bin=GWF2_Lentisphaerae_52_8 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
50S ribosomal protein L17
Tax=GWF2_Lentisphaerae_52_8_curated
anamox3_curated_scaffold_1283_8
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11182..12270)
DNA (1089bp) protein (363aa)
DNA-directed RNA polymerase subunit alpha Tax=Methylacidiphilum fumariolicum SolV RepID=I0JW10_9BACT
rpoA; DNA-directed RNA polymerase subunit alpha
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
anamox3_curated_scaffold_1283_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(12424..13038)
DNA (615bp) protein (205aa)
30S ribosomal protein S4 Tax=Verrucomicrobium sp. 3C RepID=UPI00036A4AC4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rpsD; 30S ribosomal protein S4
anamox3_curated_scaffold_1283_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(13063..13659)
DNA (597bp) protein (199aa)
30S ribosomal protein S11 Tax=Pedosphaera parvula Ellin514 RepID=B9XFK8_9BACT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
30S ribosomal protein S11
anamox3_curated_scaffold_1283_11
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(13698..14093)
DNA (396bp) protein (132aa)
30S ribosomal protein S13 Tax=Verrucomicrobium sp. 3C RepID=UPI0003800D48
rpsM; 30S ribosomal protein S13
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
anamox3_curated_scaffold_1283_12
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

comp(14208..14444)
DNA (237bp) protein (79aa)
Translation initiation factor IF-1 bin=GWA2_Planctomycetia_40_7 species=unknown genus=unknown taxon_order=unknown taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
translation initiation factor IF-1
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
anamox3_curated_scaffold_1283_13
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(14490..15287)
DNA (798bp) protein (266aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
Methionine aminopeptidase Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ3_9BACT
map; methionine aminopeptidase
anamox3_curated_scaffold_1283_14
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(15284..15949)
DNA (666bp) protein (222aa)
adenylate kinase Tax=Hippea alviniae RepID=UPI0003B78B8A
adenylate kinase
Tax=CG_Arma_01
anamox3_curated_scaffold_1283_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(16238..17602)
DNA (1365bp) protein (455aa)
Protein translocase subunit SecY Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ2_9BACT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
secY; preprotein translocase subunit SecY
anamox3_curated_scaffold_1283_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(17668..18129)
DNA (462bp) protein (154aa)
50S ribosomal protein L15 Tax=Verrucomicrobium spinosum RepID=UPI0001744E61
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L15
anamox3_curated_scaffold_1283_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(18150..18782)
DNA (633bp) protein (211aa)
30S ribosomal protein S5 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ0_9BACT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S5
anamox3_curated_scaffold_1283_18
Gordonia hirsuta, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18795..19163)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 Tax=Gordonia hirsuta DSM 44140 = NBRC 16056 RepID=L7L8Q5_9ACTO
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia hirsuta DSM 44140 = NBRC 16056.;"
50S ribosomal protein L18
anamox3_curated_scaffold_1283_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(19188..19715)
DNA (528bp) protein (176aa)
50S ribosomal protein L6 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUY8_9BACT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rplF; 50S ribosomal protein L6
anamox3_curated_scaffold_1283_20
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists


comp(19783..20178)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 bin=GWF2_Lentisphaerae_57_35 species=Alicyclobacillus hesperidum genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
30S ribosomal protein S8
Tax=GWF2_Lentisphaerae_57_35_curated
anamox3_curated_scaffold_1283_21
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(20192..20377)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=RS14Z_ROSCS
rpsN; 30S ribosomal protein S14
Tax=GWF2_Verrucomicrobia_62_7_curated
anamox3_curated_scaffold_1283_22
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20381..20929)
DNA (549bp) protein (183aa)
50S ribosomal protein L5 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VVJ5_CLOSH
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
anamox3_curated_scaffold_1283_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(20942..21202)
DNA (261bp) protein (87aa)
50S ribosomal protein L24 Tax=Pedosphaera parvula Ellin514 RepID=B9XFM0_9BACT
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplX; 50S ribosomal protein L24
anamox3_curated_scaffold_1283_24
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(21202..21537)
DNA (336bp) protein (112aa)
50S ribosomal protein L14 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0J4_METI4
rplN; 50S ribosomal protein L14
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Displaying 24 items

View Taxonomy