ggKbase home page

anamox4_curated_scaffold_43

Search features with annotation key words

Displaying items 31-60 of 145 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox4_curated_scaffold_43_31
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33372..34121)
-----------------
DNA (750bp)
protein (250aa)
Enoyl-CoA hydratase/carnithine racemase Tax=Mycobacterium smegmatis JS623 RepID=L0IMV8_MYCSM
enoyl-CoA hydratase/carnithine racemase
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:AGB20805.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
anamox4_curated_scaffold_43_32
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34339..35997
-----------------
DNA (1659bp)
protein (553aa)
Two-component system sensor kinase Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1I3T0_9PSEU
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
anamox4_curated_scaffold_43_33
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36185..36619
-----------------
DNA (435bp)
protein (145aa)
membrane protein Tax=Nevskia ramosa RepID=UPI0003B4AFB0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL43626.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
anamox4_curated_scaffold_43_34
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36717..37901
-----------------
DNA (1185bp)
protein (395aa)
acetylornithine and succinylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase Tax=delta proteobacterium MLMS-1 RepID=Q1NRT1_9DELT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
anamox4_curated_scaffold_43_35
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37898..38818
-----------------
DNA (921bp)
protein (307aa)
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHR1_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
anamox4_curated_scaffold_43_36
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38815..40029
-----------------
DNA (1215bp)
protein (405aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDM7_DESAR
Tax=GWA2_Deltaproteobacteria_45_12_curated
anamox4_curated_scaffold_43_37
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40026..41405
-----------------
DNA (1380bp)
protein (460aa)
Argininosuccinate lyase bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
argininosuccinate lyase
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
anamox4_curated_scaffold_43_38
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41402..41890
-----------------
DNA (489bp)
protein (163aa)
Fibronectin type III domain protein Tax=Geobacter sp. (strain M18) RepID=E8WUA2_GEOS8
fibronectin type III domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
anamox4_curated_scaffold_43_39
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41908..43161
-----------------
DNA (1254bp)
protein (418aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
anamox4_curated_scaffold_43_40
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43165..44070
-----------------
DNA (906bp)
protein (302aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
Diaminopimelate epimerase Tax=Lachnospiraceae bacterium A2 RepID=R9K808_9FIRM
anamox4_curated_scaffold_43_41
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44096..44989
-----------------
DNA (894bp)
protein (298aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
anamox4_curated_scaffold_43_42
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44986..45780
-----------------
DNA (795bp)
protein (265aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000255|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000255|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000255|HAMAP-Rule:MF_00102};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
4-hydroxy-tetrahydrodipicolinate reductase Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=DAPB_ANAD2
anamox4_curated_scaffold_43_43
Nocardia vulneris, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

45855..46652
-----------------
DNA (798bp)
protein (266aa)
Uncharacterized protein Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YNS2_NOCFA
Uncharacterized protein {ECO:0000313|EMBL:KIA64146.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia vulneris.;"
hypothetical protein
anamox4_curated_scaffold_43_44
R_NC10_66_22, NC10, Bacteria

Not on your lists

46865..48034
-----------------
DNA (1170bp)
protein (390aa)
LL-diaminopimelate aminotransferase; K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
anamox4_curated_scaffold_43_45
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48051..48545
-----------------
DNA (495bp)
protein (165aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
anamox4_curated_scaffold_43_46
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(48508..52920)
-----------------
DNA (4413bp)
protein (1471aa)
Response regulator receiver protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
response regulator receiver protein
Tax=RBG_16_Acidobacteria_68_9_curated
anamox4_curated_scaffold_43_47
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53071..54246
-----------------
DNA (1176bp)
protein (392aa)
PAS domain S-box bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
response regulator receiver
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
anamox4_curated_scaffold_43_48
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

54381..55013
-----------------
DNA (633bp)
protein (211aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
ATP--cobalamin adenosyltransferase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
anamox4_curated_scaffold_43_49
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

55010..55690
-----------------
DNA (681bp)
protein (227aa)
Beta-lactamase-like bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Beta-lactamase-like
Tax=GWA2_Rokubacteria_73_35_curated
anamox4_curated_scaffold_43_50
RLO_Deltaproteobacteria_40_28, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55805..57058
-----------------
DNA (1254bp)
protein (418aa)
Crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing Tax=Caenispirillum salinarum AK4 RepID=K9HLQ4_9PROT
Zinc-binding dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_40_28_curated
anamox4_curated_scaffold_43_51
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(57089..58732)
-----------------
DNA (1644bp)
protein (548aa)
Acyl-CoA dehydrogenase domain protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRW1_ACCPU
acyl-CoA dehydrogenase domain-containing protein
Tax=RBG_16_Acidobacteria_68_9_curated
anamox4_curated_scaffold_43_52
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

58958..59854
-----------------
DNA (897bp)
protein (299aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-hydroxyacyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
anamox4_curated_scaffold_43_53

Not on your lists

59863..60273
-----------------
DNA (411bp)
protein (137aa)
putative methylmalonyl-CoA epimerase (EC:5.1.99.1)
Uncharacterized protein {ECO:0000313|EMBL:KKL03629.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Lactoylglutathione lyase and related lyases bin=GWC2_Methylomirabilis_70_24 species=uncultured Chloroflexi bacterium HF0200_09I09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
anamox4_curated_scaffold_43_54
unknown

Not on your lists

60273..60650
-----------------
DNA (378bp)
protein (126aa)

This feature has no annotations

anamox4_curated_scaffold_43_55
unknown

Not on your lists

60790..61140
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

anamox4_curated_scaffold_43_56
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

61232..62644
-----------------
DNA (1413bp)
protein (471aa)
Major facilitator superfamily MFS_1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZU8_ROSS1
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ92151.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
anamox4_curated_scaffold_43_57
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62663..64078)
-----------------
DNA (1416bp)
protein (472aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI0003484987
Putative two-component hybrid sensor and regulator {ECO:0000313|EMBL:GAO37887.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
response regulator receiver sensor signal transduction histidine kinase
anamox4_curated_scaffold_43_58
RLO_PLX_64_10, Bacteria

Not on your lists

comp(64081..64932)
-----------------
DNA (852bp)
protein (284aa)
Metal dependent phosphohydrolase Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QDM5_DESB2
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
anamox4_curated_scaffold_43_59
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65033..65962
-----------------
DNA (930bp)
protein (310aa)
Putative UDP-glucose 4-epimerase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MGC7_CORCM
putative UDP-glucose 4-epimerase
Tax=RBG_13_Deltaproteobacteria_65_10_curated
anamox4_curated_scaffold_43_60
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65972..67012
-----------------
DNA (1041bp)
protein (347aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=Cystobacter fuscus DSM 2262 RepID=S9PFN9_9DELT
Glycerol acyltransferase {ECO:0000313|EMBL:KFA91340.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
acyltransferase domain-containing protein
Displaying items 31-60 of 145 in total

View Taxonomy