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14_0929_05_30cm_scaffold_3440

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Displaying items 1-30 of 47 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_30cm_scaffold_3440_1

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comp(3..380)
DNA (378bp) protein (126aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
D-alanine--D-alanine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z2_9BACT
ddlA; D-alanine-D-alanine ligase
14_0929_05_30cm_scaffold_3440_2

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comp(377..3664)
DNA (3288bp) protein (1096aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|SAAS:SAAS00041869}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00274693};; EC=1.3.1.98 {ECO:0000256|SAAS:SAAS00057125};; EC=6.3.2.8 {ECO:0000256|SAAS:SAAS00243344};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramate/alanine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z4_9BACT
UDP-N-acetylmuramate--L-alanine ligase
14_0929_05_30cm_scaffold_3440_3

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comp(3724..4866)
DNA (1143bp) protein (381aa)
Cell cycle protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z6_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48691.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ftsW; stage V sporulation protein E
14_0929_05_30cm_scaffold_3440_4

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comp(4889..5452)
DNA (564bp) protein (188aa)
Peptidoglycan-binding LysM n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z7_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48692.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0929_05_30cm_scaffold_3440_5

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comp(5449..6792)
DNA (1344bp) protein (448aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z8_9BACT
UDP-N-acetylmuramoylalanine--D-glutamate ligase
14_0929_05_30cm_scaffold_3440_6

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comp(6789..7889)
DNA (1101bp) protein (367aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z9_9BACT
rfe; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
14_0929_05_30cm_scaffold_3440_7

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comp(7886..9280)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D200_9BACT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
14_0929_05_30cm_scaffold_3440_8

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comp(9295..10773)
DNA (1479bp) protein (493aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D201_9BACT
UDP-N-acetylmuramyl tripeptide synthetase
14_0929_05_30cm_scaffold_3440_9

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comp(10802..12619)
DNA (1818bp) protein (606aa)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D201_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48697.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ftsI; Cell division protein FtsI
14_0929_05_30cm_scaffold_3440_10

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comp(12616..12918)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D202_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48698.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0929_05_30cm_scaffold_3440_11

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comp(12985..13983)
DNA (999bp) protein (333aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D203_9BACT
S-adenosyl-methyltransferase MraW
14_0929_05_30cm_scaffold_3440_12

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comp(14006..14515)
DNA (510bp) protein (170aa)
Protein MraZ n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D204_9BACT
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
MraZ protein
14_0929_05_30cm_scaffold_3440_13

Not on your lists

14590..15105
DNA (516bp) protein (172aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48701.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0929_05_30cm_scaffold_3440_14

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15224..15871
DNA (648bp) protein (216aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP4_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48702.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tolQ; MotA/TolQ/ExbB proton channel family protein
14_0929_05_30cm_scaffold_3440_15

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16007..16411
DNA (405bp) protein (135aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48703.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0929_05_30cm_scaffold_3440_16

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16408..17058
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP2_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48704.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0929_05_30cm_scaffold_3440_17

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17286..18464
DNA (1179bp) protein (393aa)
IMP dehydrogenase family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPS3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48705.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
guaB; IMP dehydrogenase/GMP reductase
14_0929_05_30cm_scaffold_3440_18

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18493..19743
DNA (1251bp) protein (417aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
3-oxoacyl-ACP synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017460D6
fabB; 3-oxoacyl-(acyl-carrier-protein) synthase rbh
14_0929_05_30cm_scaffold_3440_trna_1
unknown

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19814..19884
DNA (71bp)
transferRNA Gly
14_0929_05_30cm_scaffold_3440_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

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19951..21486
DNA (1536bp) protein (512aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE11 RepID=UPI0003645E8E
hypothetical protein
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
14_0929_05_30cm_scaffold_3440_20
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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21538..23856
DNA (2319bp) protein (773aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVC8_9BACT
hypothetical protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
14_0929_05_30cm_scaffold_3440_21
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(23799..24377)
DNA (579bp) protein (193aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA (EC:2.7.8.5)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB26_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
14_0929_05_30cm_scaffold_3440_22
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(24374..24808)
DNA (435bp) protein (145aa)
Molybdopterin converting factor, large subunit n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DXY3_METI4
moaE; Molybdopterin converting factor, large subunit
Molybdopterin converting factor, large subunit {ECO:0000313|EMBL:ACD83935.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
14_0929_05_30cm_scaffold_3440_23
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24868..26352
DNA (1485bp) protein (495aa)
6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=1422 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus (Bacillus stearothermophilus).;"
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Geobacillus kaustophilus (strain HTA426) RepID=Q5KXF7_GEOKA
14_0929_05_30cm_scaffold_3440_24
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

comp(26428..29493)
DNA (3066bp) protein (1022aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
DNA polymerase III alpha subunit n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXS3_9BACT
DNA polymerase III subunit alpha
14_0929_05_30cm_scaffold_3440_25
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

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comp(29565..30521)
DNA (957bp) protein (319aa)
Nucleotidyltransferase/DNA polymerase n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXS2_9BACT
Nucleotidyltransferase/DNA polymerase {ECO:0000313|EMBL:ACO70895.1}; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
DNA repair nucleotidyltransferase/DNA polymerase-like protein
14_0929_05_30cm_scaffold_3440_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(30564..31883)
DNA (1320bp) protein (440aa)
Helicase c2 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6W3_9BACT
Helicase c2 {ECO:0000313|EMBL:EDY17914.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
helicase c2
14_0929_05_30cm_scaffold_3440_27
unknown

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32057..32344
DNA (288bp) protein (96aa)

This feature has no annotations

14_0929_05_30cm_scaffold_3440_28
unknown

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32386..32532
DNA (147bp) protein (49aa)

This feature has no annotations

14_0929_05_30cm_scaffold_3440_29
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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32565..34073
DNA (1509bp) protein (503aa)
Permease YjgP/YjgQ family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU57_9BACT
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:EDY22095.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
permease
Displaying items 1-30 of 47 in total

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