ggKbase home page

14_0929_05_40cm_scaffold_633

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_40cm_scaffold_633_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..567)
DNA (567bp) protein (189aa)
Amidohydrolase id=4792716 bin=GWC2_Methylomirabilis_70_16 species=Enterococcus faecalis genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase 3
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_05_40cm_scaffold_633_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(564..1094)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9THI2_CALOO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_05_40cm_scaffold_633_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1160..2206)
DNA (1047bp) protein (349aa)
Sulfate/thiosulfate import ATP-binding protein CysA 2 id=4975511 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces sp. Mg1 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_633_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2203..2988)
DNA (786bp) protein (262aa)
Binding--dependent transport system inner membrane component family protein id=4975510 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2985..3779)
DNA (795bp) protein (265aa)
ABC-type spermidine/putrescine transport system, permease component I id=4975509 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. YR681 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
binding-protein-dependent transport systems inner membrane component
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3776..4807)
DNA (1032bp) protein (344aa)
Extracellular solute-binding protein family 1 id=4534452 bin=GWF2_Methylomirabilis_70_14 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
extracellular solute-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_7
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4845..5429)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0QWJ9_MYCS2
Glycine cleavage system protein T (Aminomethyltransferase) {ECO:0000313|EMBL:CDO26302.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
hypothetical protein
14_0929_05_40cm_scaffold_633_8
Jonquetella anthropi, Jonquetella, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(5429..6145)
DNA (717bp) protein (239aa)
hydantoin racemase (EC:5.1.99.-)
Hydantoin racemase n=1 Tax=Jonquetella anthropi DSM 22815 RepID=H0UIF3_9BACT
Hydantoin racemase {ECO:0000313|EMBL:EHM12661.1}; TaxID=885272 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Jonquetella.;" source="Jonquetella anthropi DSM 22815.;"
14_0929_05_40cm_scaffold_633_9
unknown

Not on your lists

comp(6142..6444)
DNA (303bp) protein (101aa)

This feature has no annotations

14_0929_05_40cm_scaffold_633_10
unknown

Not on your lists

comp(6441..6617)
DNA (177bp) protein (59aa)

This feature has no annotations

14_0929_05_40cm_scaffold_633_11
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(6691..7197)
DNA (507bp) protein (169aa)
endoribonuclease; K07567 TdcF protein id=1246927 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
14_0929_05_40cm_scaffold_633_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7215..7961)
DNA (747bp) protein (249aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-ACP synthase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B51EF5
Uncharacterized protein {ECO:0000313|EMBL:ETW98717.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
14_0929_05_40cm_scaffold_633_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7978..8913)
DNA (936bp) protein (312aa)
carbamate kinase (EC:2.7.2.2)
Carbamate kinase id=4792718 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_633_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8910..10280)
DNA (1371bp) protein (457aa)
Putative uncharacterized protein id=2085282 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_15
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

10366..10992
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAH3_ANADF
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
14_0929_05_40cm_scaffold_633_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10992..11990
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WD4_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
14_0929_05_40cm_scaffold_633_17
unknown

Not on your lists

12371..12589
DNA (219bp) protein (73aa)

This feature has no annotations

14_0929_05_40cm_scaffold_633_18
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12593..12883
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW97051.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
id=1956518 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
14_0929_05_40cm_scaffold_633_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12909..14402)
DNA (1494bp) protein (498aa)
Bacterial FdrA family protein id=3663091 bin=GWF2_Lentisphaerae_57_35 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
protein fdrA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_633_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14411..14767)
DNA (357bp) protein (119aa)
Multi-sensor hybrid histidine kinase id=3222448 bin=GWC2_Methylomirabilis_70_16 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
14_0929_05_40cm_scaffold_633_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14764..16119)
DNA (1356bp) protein (452aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54-dependent transcriptional response regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_633_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16123..18348)
DNA (2226bp) protein (742aa)
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
sensor histidine kinase, HAMP and PAS domain-containing
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_633_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18368..18928)
DNA (561bp) protein (187aa)
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_633_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19017..19949)
DNA (933bp) protein (311aa)
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20071..20496)
DNA (426bp) protein (142aa)
hypothetical protein id=14625167 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_05_40cm_scaffold_633_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20489..21166)
DNA (678bp) protein (226aa)
Ribosomal RNA small subunit methyltransferase E id=2287874 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_633_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21244..22125)
DNA (882bp) protein (294aa)
Ribosomal protein L11 methyltransferase id=2287873 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prmA; 50S ribosomal protein L11 methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22125..23219)
DNA (1095bp) protein (365aa)
Chaperone protein DnaJ id=2287872 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_633_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23222..23740)
DNA (519bp) protein (173aa)
Protein GrpE id=2287871 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molecular chaperone GrpE
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_633_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23737..24753)
DNA (1017bp) protein (339aa)
Heat-inducible transcription repressor HrcA id=2287870 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hrcA; heat-inducible transcription repressor HrcA
Tax=GWA2_Rokubacteria_73_35_curated
Displaying items 1-30 of 33 in total

View Taxonomy