ggKbase home page

14_0929_05_40cm_scaffold_698

Search features with annotation key words

Displaying items 1-30 of 58 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_40cm_scaffold_698_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(1..1875)
DNA (1875bp) protein (625aa)
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase id=4657185 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_698_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1872..2744)
DNA (873bp) protein (291aa)
tpl protein id=14626710 bin=bin7_NC10_sister species=Shuttleworthia satelles genus=Shuttleworthia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Stage 0 sporulation protein yaaT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2755..3594)
DNA (840bp) protein (280aa)
DNA polymerase III, delta prime subunit id=4657188 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase III subunit delta'
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3584..4204)
DNA (621bp) protein (207aa)
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase id=4657189 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4358..5569
DNA (1212bp) protein (404aa)
56kDa selenium binding protein (SBP56) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8N0_SINAD
56kDa selenium binding protein (SBP56)
56kDa selenium binding protein (SBP56) {ECO:0000313|EMBL:AGA24986.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
14_0929_05_40cm_scaffold_698_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

5571..6200
DNA (630bp) protein (210aa)
Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=U3GKE9_SINAD
hypothetical protein
Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems {ECO:0000313|EMBL:AGA24985.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
14_0929_05_40cm_scaffold_698_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6223..6960
DNA (738bp) protein (246aa)
Glycosyltransferase id=2319272 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_698_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6970..8106)
DNA (1137bp) protein (379aa)
histone deacetylase/AcuC/AphA family protein id=14626707 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
histone deacetylase/AcuC/AphA family protein rbh
Tax=CSP1_6_Rokubacteria
14_0929_05_40cm_scaffold_698_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8103..8591)
DNA (489bp) protein (163aa)
Molybdenum cofactor biosynthesis protein C id=4663704 bin=GWF2_Methylomirabilis_70_14 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moaC; molybdenum cofactor biosynthesis protein C
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8691..8912)
DNA (222bp) protein (74aa)
hypothetical protein id=14626705 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9080..10186)
DNA (1107bp) protein (369aa)
Tungsten transporter ATP binding protein id=2315313 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tungsten transporter ATP binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10183..11307)
DNA (1125bp) protein (375aa)
Putative ABC transporter ATP-binding protein id=2315314 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_40cm_scaffold_698_13
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(11309..11974)
DNA (666bp) protein (222aa)
ABC transporter permease protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NDF3_GLOVI
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAC92223.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
14_0929_05_40cm_scaffold_698_14
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11982..12191)
DNA (210bp) protein (70aa)
TOBE domain protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UGY2_9RHIZ
Transporter {ECO:0000313|EMBL:EZQ16564.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
molybdopterin binding protein
14_0929_05_40cm_scaffold_698_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12231..12995)
DNA (765bp) protein (255aa)
Putative molybdenum ABC transporter, molybdenum-binding protein ModA n=1 Tax=Variovorax paradoxus B4 RepID=T1XEE5_VARPD
modA; putative molybdenum ABC transporter, molybdenum-binding protein ModA
Putative molybdenum ABC transporter, molybdenum-binding protein ModA {ECO:0000313|EMBL:AGU51297.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
14_0929_05_40cm_scaffold_698_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13018..13713)
DNA (696bp) protein (232aa)
ABC-type tungstate transport permease protein id=2315318 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_17
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13714..14049)
DNA (336bp) protein (112aa)
Cytochrome c class I n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UEZ6_RALPJ
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACD26928.1}; Flags: Precursor;; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
14_0929_05_40cm_scaffold_698_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14046..14915)
DNA (870bp) protein (290aa)
ABC-type tungstate transport system permease component-like protein id=4663768 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type tungstate transport system permease component-like protein
Tax=GWA2_Rokubacteria_70_23_curated
14_0929_05_40cm_scaffold_698_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14975..15304)
DNA (330bp) protein (110aa)
Putative transcriptional regulator, ModE family id=3965663 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
putative transcriptional regulator, ModE family
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
14_0929_05_40cm_scaffold_698_20
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(15396..17588)
DNA (2193bp) protein (731aa)
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
Xanthine dehydrogenase molybdenum-binding subunit id=4213166 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
14_0929_05_40cm_scaffold_698_21

Not on your lists

comp(17593..18075)
DNA (483bp) protein (161aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C2N0_DESTA
Marine sediment metagenome DNA, contig: S01H4_S12614 {ECO:0000313|EMBL:GAG96785.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
14_0929_05_40cm_scaffold_698_22
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(18093..18959)
DNA (867bp) protein (289aa)
Putative carbon monoxide dehydrogenase medium chain n=2 Tax=Clostridiales RepID=C5EGQ6_9FIRM
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
Tax=RBG_16_Chloroflexi_68_14_curated
14_0929_05_40cm_scaffold_698_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(19017..20462)
DNA (1446bp) protein (482aa)
Aldehyde Dehydrogenase id=1250363 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
NAD-dependent aldehyde dehydrogenase
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
14_0929_05_40cm_scaffold_698_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20562..22166)
DNA (1605bp) protein (535aa)
d-aminoacylase id=2315330 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-aminoacylase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_698_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22169..22603)
DNA (435bp) protein (145aa)
Peptidyl-prolyl cis-trans isomerase id=2315332 bin=GWA2_Methylomirabilis_73_35 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22600..23145)
DNA (546bp) protein (182aa)
Peptidyl-prolyl cis-trans isomerase id=2315334 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_40cm_scaffold_698_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23242..25041
DNA (1800bp) protein (600aa)
GTP-binding protein TypA/BipA id=2315338 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
typA; GTP-binding protein TypA/BipA
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_40cm_scaffold_698_28
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25138..27150)
DNA (2013bp) protein (671aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HER8_ANADF
PAS/PAC sensor hybrid histidine kinase
14_0929_05_40cm_scaffold_698_29
unknown

Not on your lists

27497..27739
DNA (243bp) protein (81aa)

This feature has no annotations

14_0929_05_40cm_scaffold_698_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27811..28242
DNA (432bp) protein (144aa)
MaoC-like dehydratase id=2213477 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC domain protein dehydratase
Tax=GWA2_Rokubacteria_73_35_curated
Displaying items 1-30 of 58 in total

View Taxonomy