ggKbase home page

14_1009_16_40cm_scaffold_4462

Search features with annotation key words

Displaying items 1-30 of 31 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_1009_16_40cm_scaffold_4462_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

2..454
DNA (453bp) protein (151aa)
OmpA family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRV3_BREDI
OmpA/MotB domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_4462_2
unknown

Not on your lists

comp(549..956)
DNA (408bp) protein (136aa)

This feature has no annotations

14_1009_16_40cm_scaffold_4462_3
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1110..1718
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VTZ4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGF33899.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
hypothetical protein
14_1009_16_40cm_scaffold_4462_4
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1896..2588
DNA (693bp) protein (231aa)
Putative two component transcriptional regulator n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A1E8_RHIFH
CpxR {ECO:0000313|EMBL:EXL06772.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
putative two component transcriptional regulator
14_1009_16_40cm_scaffold_4462_5
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2604..3851
DNA (1248bp) protein (416aa)
Two component sensor histidine kinase protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T322_JANMA
two component sensor histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
14_1009_16_40cm_scaffold_4462_6
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3834..4868)
DNA (1035bp) protein (345aa)
Alcohol dehydrogenase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XA0_STIAD
Zinc-binding dehydrogenase {ECO:0000313|EMBL:KFA91347.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
alcohol dehydrogenase
14_1009_16_40cm_scaffold_4462_7
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5024..5761)
DNA (738bp) protein (246aa)
Glutaconate CoA-transferase family, subunit B n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08X99_STIAD
glutaconate CoA-transferase family subunit b
Glutaconate CoA-transferase family, subunit B {ECO:0000313|EMBL:ADO75914.1}; Putative acyl-CoA transferase {ECO:0000313|EMBL:EAU65091.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
14_1009_16_40cm_scaffold_4462_8
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5761..6597)
DNA (837bp) protein (279aa)
Glutaconate CoA-transferase family subunit A n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CLR8_MYXFH
glutaconate CoA-transferase family subunit A
Glutaconate CoA-transferase family subunit A {ECO:0000313|EMBL:AEI67777.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
14_1009_16_40cm_scaffold_4462_9
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(6594..6998)
DNA (405bp) protein (135aa)
Putative uncharacterized protein id=4968592 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Putative uncharacterized protein {ECO:0000313|EMBL:EHO43061.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
14_1009_16_40cm_scaffold_4462_10
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(7004..8152)
DNA (1149bp) protein (383aa)
Thiolase family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6F1_CALAS
thiolase family protein
Thiolase family protein {ECO:0000313|EMBL:BAM00839.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
14_1009_16_40cm_scaffold_4462_11
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(8149..9198)
DNA (1050bp) protein (350aa)
Hydroxymethylglutaryl-coenzyme A synthase family protein id=4968595 bin=GWA2_Elusimicrobia_69_24 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=GWA2_Elusimicrobia_69_24_curated
14_1009_16_40cm_scaffold_4462_12
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9195..9884)
DNA (690bp) protein (230aa)
TetR family transcriptional regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U7Z2_MYXSD
TetR family transcriptional regulator {ECO:0000313|EMBL:AKF82198.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
TetR family transcriptional regulator
14_1009_16_40cm_scaffold_4462_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

10056..12674
DNA (2619bp) protein (873aa)
hypothetical protein id=12556165 bin=CNBR_ACIDO species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_4462_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12682..14412)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEU9_RHOM4
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_4462_15
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(14432..15364)
DNA (933bp) protein (311aa)
Proline dehydrogenase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SV36_9BACT id=5223515 bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative proline dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
14_1009_16_40cm_scaffold_4462_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15423..17213
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003792F76 rbh
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:CDM64608.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glucose-methanol-choline oxidoreductase
14_1009_16_40cm_scaffold_4462_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17210..17785
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000382830F
Gluconate 2-dehydrogenase subunit 3 {ECO:0000313|EMBL:CDM64605.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
14_1009_16_40cm_scaffold_4462_18
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17787..19004
DNA (1218bp) protein (406aa)
nucleoside hydrolase n=1 Tax=Pseudomonas fuscovaginae RepID=UPI000364D159
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:KIH84401.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
nucleoside hydrolase
14_1009_16_40cm_scaffold_4462_19
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(18859..20406)
DNA (1548bp) protein (516aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y6Z4_SORCE
Tax=RBG_16_Actinobacteria_68_12_curated
14_1009_16_40cm_scaffold_4462_20
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20490..21167)
DNA (678bp) protein (226aa)
Putative membrane protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIU0_SORC5
Uncharacterized protein {ECO:0000313|EMBL:ETW99746.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
14_1009_16_40cm_scaffold_4462_21
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21626..24013)
DNA (2388bp) protein (796aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIZ0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV12109.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
14_1009_16_40cm_scaffold_4462_22
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24144..25181)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465V8_METBF
Uncharacterized protein {ECO:0000313|EMBL:AAZ72334.1}; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri (strain Fusaro / DSM 804).;"
YVTN family beta-propeller repeat protein
14_1009_16_40cm_scaffold_4462_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

25316..25966
DNA (651bp) protein (217aa)
FHA domain-containing protein id=12554289 bin=CNBR_ACIDO species=Dyella japonica genus=Dyella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
signal transduction response regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_1009_16_40cm_scaffold_4462_24
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

25963..28398
DNA (2436bp) protein (812aa)
TPR repeat-containing serine/threonin protein kinase id=24431878 bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonin protein kinase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_1009_16_40cm_scaffold_4462_25
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

28458..28970
DNA (513bp) protein (171aa)
GCN5-related N-acetyltransferase n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TWG8_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KIF17793.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
N-acetyltransferase GCN5
14_1009_16_40cm_scaffold_4462_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

29149..31884
DNA (2736bp) protein (912aa)
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=12555790 bin=CNBR_ACIDO species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_1009_16_40cm_scaffold_4462_27
unknown

Not on your lists

31848..32270
DNA (423bp) protein (141aa)

This feature has no annotations

14_1009_16_40cm_scaffold_4462_28
unknown

Not on your lists

32282..32800
DNA (519bp) protein (173aa)

This feature has no annotations

14_1009_16_40cm_scaffold_4462_29
unknown

Not on your lists

32885..33040
DNA (156bp) protein (52aa)

This feature has no annotations

14_1009_16_40cm_scaffold_4462_30
unknown

Not on your lists

33154..33555
DNA (402bp) protein (134aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

View Taxonomy