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13_1_40cm_2_scaffold_27383

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_27383_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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2..235
DNA (234bp) protein (78aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) id=14627415 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
13_1_40cm_2_scaffold_27383_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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372..833
DNA (462bp) protein (154aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
13_1_40cm_2_scaffold_27383_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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800..1762
DNA (963bp) protein (321aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curate
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
13_1_40cm_2_scaffold_27383_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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1793..2464
DNA (672bp) protein (224aa)
cell division ATP-binding protein FtsE Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cell division ATP-binding protein FtsE id=4608921 bin=GWC2_Methylomirabilis_70_24 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division ATP-binding protein FtsE
13_1_40cm_2_scaffold_27383_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2468..3352
DNA (885bp) protein (295aa)
cell division protein FtsX; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Cell division protein FtsX id=4608922 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division protein
13_1_40cm_2_scaffold_27383_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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3349..4689
DNA (1341bp) protein (447aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14627411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_40cm_2_scaffold_27383_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4712..5950
DNA (1239bp) protein (413aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) id=14627410 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
13_1_40cm_2_scaffold_27383_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6061..7062
DNA (1002bp) protein (334aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=14627409 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase
13_1_40cm_2_scaffold_27383_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7059..8141
DNA (1083bp) protein (361aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_12
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] id=14627408 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
13_1_40cm_2_scaffold_27383_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8138..9370
DNA (1233bp) protein (411aa)
ntrC; nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=2650854 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Displaying 10 items

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