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13_1_20cm_4_scaffold_2535

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2535_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

2..940
DNA (939bp) protein (313aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein; K01739 cystathionine gamma-synthase [EC:2.5.1.48] Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein n=1 Tax=Demetria terragena RepID=UPI00037CB987
metB; cystathionine gamma-synthase
13_1_20cm_4_scaffold_2535_2
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

937..2202
DNA (1266bp) protein (422aa)
MGT family glycosyltransferase Tax=GWC2_RIF_CHLX_73_18_curated
Glycosyltransferase, MGT family id=4213226 bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + rbh
MGT family glycosyltransferase
13_1_20cm_4_scaffold_2535_3
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2199..2786)
DNA (588bp) protein (196aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RBG_13_Actinobacteria_63_9_curated
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F9K5_CONWI
13_1_20cm_4_scaffold_2535_4
unknown

Not on your lists

comp(2783..3205)
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_20cm_4_scaffold_2535_trna_1
unknown

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comp(3305..3377)
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_2535_5
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3453..3908
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Natronorubrum tibetense GA33 RepID=L9WBT0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHD09225.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
hypothetical protein
13_1_20cm_4_scaffold_2535_6
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3905..4969)
DNA (1065bp) protein (355aa)
Oxidoreductase molybdopterin binding n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KYC9_9ACTO
Oxidoreductase molybdopterin binding {ECO:0000313|EMBL:CCH16576.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lup
molybdopterin binding oxidoreductase
13_1_20cm_4_scaffold_2535_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4990..5652)
DNA (663bp) protein (221aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F144_CONWI
ECF subfamily RNA polymerase sigma-24 subunit; K03091 RNA polymerase sporulation-specific sigma factor Tax=RBG_16_Actinobacteria_68_12_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_4_scaffold_2535_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(5767..6084)
DNA (318bp) protein (106aa)
Tax=RBG_16_Actinobacteria_67_10_curated
13_1_20cm_4_scaffold_2535_9
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(6077..6793)
DNA (717bp) protein (239aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RBG_16_Actinobacteria_67_10_curated
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F143_CONWI
TrmH family RNA methyltransferase
13_1_20cm_4_scaffold_2535_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(6790..8085)
DNA (1296bp) protein (432aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RBG_16_Actinobacteria_67_10_curated
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Patulibacter medicamentivorans RepID=H0E1D3_9ACTN
13_1_20cm_4_scaffold_2535_11
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(8072..8914)
DNA (843bp) protein (281aa)
glutamyl-tRNA synthetase Tax=RBG_16_Actinobacteria_67_10_curated
glutamyl-tRNA synthetase
Glutamate--tRNA ligase id=4575387 bin=GWA2_Planctomycete_KSU_39_15 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
13_1_20cm_4_scaffold_2535_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

8942..9658
DNA (717bp) protein (239aa)
HhH-GPD family protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAY2_CONWI
HhH-GPD family protein {ECO:0000313|EMBL:ADB51295.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woes
HhH-GPD family protein
13_1_20cm_4_scaffold_2535_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(9642..10127)
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] Tax=RBG_16_Actinobacteria_68_12_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P3Y1_9BACT
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
13_1_20cm_4_scaffold_2535_14
Tsukamurella paurometabola, Tsukamurella, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10797..11462)
DNA (666bp) protein (222aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5USV3_TSUPD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_20cm_4_scaffold_2535_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(11575..12099)
DNA (525bp) protein (175aa)
Transcriptional regulator, CarD family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F138_CONWI
BadM/Rrf2 family transcriptional regulator; K07736 CarD family transcriptional regulator Tax=RBG_16_Actinobacteria_68_12_curated
BadM/Rrf2 family transcriptional regulator
13_1_20cm_4_scaffold_2535_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12263..13417)
DNA (1155bp) protein (385aa)
DNA integrity scanning protein DisA n=1 Tax=Patulibacter medicamentivorans RepID=H0E1E1_9ACTN
DNA integrity scanning protein DisA; K07067 DNA integrity scanning protein Tax=RBG_16_Actinobacteria_68_12_curated
DNA integrity scanning protein DisA
13_1_20cm_4_scaffold_2535_17
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13392..14732)
DNA (1341bp) protein (447aa)
DNA repair protein radA n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F136_CONWI
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter w
DNA repair protein RadA
13_1_20cm_4_scaffold_2535_18
unknown

Not on your lists

14867..16051
DNA (1185bp) protein (395aa)

This feature has no annotations

13_1_20cm_4_scaffold_2535_19
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16051..16626
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KIA6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EKX60556.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
13_1_20cm_4_scaffold_2535_20

Not on your lists

comp(16687..17232)
DNA (546bp) protein (182aa)
ATPase AAA-2 domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F133_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKK47782.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ATPase AAA
Displaying 21 items

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