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13_1_40cm_3_scaffold_4926

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_4926_1
unknown

Not on your lists

3..392
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_3_scaffold_4926_2
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(402..1385)
DNA (984bp) protein (328aa)
Electron transfer flavoprotein FAD-binding domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8EXB5_9DELT
electron transfer flavoprotein alpha-subunit; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
electron transfer flavoprotein subunit alpha/beta
13_1_40cm_3_scaffold_4926_3
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(1388..2125)
DNA (738bp) protein (246aa)
electron transfer flavoprotein subunit beta Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
Electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit id=24469727 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
electron transfer flavoprotein subunit beta
13_1_40cm_3_scaffold_4926_4
RBG_16_Archaea_50_20_curated, Archaea

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2263..2550
DNA (288bp) protein (96aa)
Sec-independent protein translocase protein TatA n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5D2_9ARCH
tatA; putative sec-independent protein translocase protein; K03116 sec-independent protein translocase protein TatA Tax=RBG_16_Archaea_50_20_curated
sec-independent protein translocase protein TatA
13_1_40cm_3_scaffold_4926_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2666..3556
DNA (891bp) protein (297aa)
Sec-independent protein translocase protein TatC n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6NAE5_9ARCH
Sec-independent protein secretion pathway component TatC; K03118 sec-independent protein translocase protein TatC Tax=RBG_16_Archaea_50_20_curated
sec-independent protein translocase protein TatC
13_1_40cm_3_scaffold_4926_6
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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4260..4562
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TWE0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EKQ51856.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacte
hypothetical protein
13_1_40cm_3_scaffold_4926_7
unknown

Not on your lists

4678..4989
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_3_scaffold_4926_8
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

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4993..6423
DNA (1431bp) protein (477aa)
hypothetical protein id=17418201 bin=RBG_16_Aminicenantes_66_30 species=Kribbella catacumbae genus=Kribbella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein Tax=RBG_16_Aminicenantes_66_30_curated
hypothetical protein
13_1_40cm_3_scaffold_4926_9
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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6643..7716
DNA (1074bp) protein (358aa)
purA; adenylosuccinate synthase (EC:6.3.4.4) Tax=RBG_13_Bathyarchaeota_38_9_curated
purA; adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ATU0_9ARCH
13_1_40cm_3_scaffold_4926_10
unknown

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comp(7723..8376)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N13 RepID=UPI000362F7C5
13_1_40cm_3_scaffold_4926_11
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(8445..9056)
DNA (612bp) protein (204aa)
2-phospho-L-lactate guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000256|HAMAP-Rule:MF_02114};; TaxID=112989
2-phospho-L-lactate guanylyltransferase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGC4_9CHLR
hypothetical protein
13_1_40cm_3_scaffold_4926_12
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(9053..9991)
DNA (939bp) protein (313aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5USE2_ROSS1
LPPG:FO 2-phospho-L-lactate transferase
13_1_40cm_3_scaffold_4926_13
unknown

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comp(10042..10434)
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_40cm_3_scaffold_4926_14
RBG_16_Archaea_50_20_curated, Archaea

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comp(10454..12280)
DNA (1827bp) protein (609aa)
GlmS; glucosamine 6-phosphate synthetase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RBG_16_Archaea_50_20_curated
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI00036C48FC
13_1_40cm_3_scaffold_4926_15
unknown

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12635..13153
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_3_scaffold_4926_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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13547..14647
DNA (1101bp) protein (367aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=RBG_13_Bathyarchaeota_38_9_curated
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYU4_METFV
13_1_40cm_3_scaffold_4926_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

14904..15650
DNA (747bp) protein (249aa)
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=RBG_16_Archaea_50_20_curated
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVK0_METKA
13_1_40cm_3_scaffold_4926_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

15952..16410
DNA (459bp) protein (153aa)
fructose bisphosphate aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RBG_16_Archaea_50_20_curated
fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NHZ5_METST
13_1_40cm_3_scaffold_4926_19
unknown

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16385..16669
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_3_scaffold_4926_20
RBG_16_Archaea_50_20_curated, Archaea

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16741..17382
DNA (642bp) protein (214aa)
3-dehydroquinate synthase; K11646 dehydroquinate synthase II [EC:1.4.1.-] Tax=RBG_16_Archaea_50_20_curated
aroB; 3-dehydroquinate synthase (EC:1.4.1.-)
3-dehydroquinate synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAN9_METCZ
13_1_40cm_3_scaffold_4926_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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17379..18062
DNA (684bp) protein (228aa)
aroD; 3-dehydroquinate dehydratase, type I; K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=RBG_13_Bathyarchaeota_38_9_curated
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RJ52_DESPD
13_1_40cm_3_scaffold_4926_22
RBG_16_Archaea_50_20_curated, Archaea

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18066..18905
DNA (840bp) protein (280aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_16_Archaea_50_20_curated
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWT7_METFV
13_1_40cm_3_scaffold_4926_23
RBG_16_Archaea_50_20_curated, Archaea

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18902..19774
DNA (873bp) protein (291aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RBG_16_Archaea_50_20_curated
Shikimate kinase n=1 Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S8E1_METSF
shikimate kinase
13_1_40cm_3_scaffold_4926_24
RBG_16_Archaea_50_20_curated, Archaea

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19771..21045
DNA (1275bp) protein (425aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_16_Archaea_50_20_curated
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Alistipes sp. CAG:157 RepID=R5WTH3_9BACT
3-phosphoshikimate 1-carboxyvinyltransferase
13_1_40cm_3_scaffold_4926_25
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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21035..22135
DNA (1101bp) protein (367aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFH5_NITGG
13_1_40cm_3_scaffold_4926_26
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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22142..23227
DNA (1086bp) protein (362aa)
Chorismate mutase n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8AAX2_IGNH4
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ABU82074.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (strain
13_1_40cm_3_scaffold_4926_27
RBG_16_Archaea_50_20_curated, Archaea

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23426..24550
DNA (1125bp) protein (375aa)
trpE; anthranilate synthase component 1 (EC:4.1.3.27) Tax=RBG_16_Archaea_50_20_curated
trpE; anthranilate synthase component 1 (EC:4.1.3.27)
Anthranilate synthase component 1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBR4_NITGG
13_1_40cm_3_scaffold_4926_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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24547..25125
DNA (579bp) protein (193aa)
trpG; anthranilate synthase component II (EC:4.1.3.27)
Anthranilate synthase component II {ECO:0000313|EMBL:AFU58604.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AFU58604.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitros
Anthranilate synthase component II n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN19_NITGG
13_1_40cm_3_scaffold_4926_29
RBG_16_Archaea_50_20_curated, Archaea

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25131..26180
DNA (1050bp) protein (350aa)
trpGD; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase (EC:4.1.3.27); K13497 anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18] Tax=RBG_16_Archaea_50
Anthranilate phosphoribosyltransferase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD09_METIK
anthranilate phosphoribosyltransferase
13_1_40cm_3_scaffold_4926_30
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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26177..26962
DNA (786bp) protein (262aa)
Indole-3-glycerol-phosphate synthase n=1 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B7L4_9ARCH
indole-3-glycerol phosphate synthase
Indole-3-glycerol-phosphate synthase {ECO:0000313|EMBL:AFS80915.1}; TaxID=1229908 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopum
Displaying items 1-30 of 31 in total

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