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13_2_20cm_scaffold_1080

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1080_1
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(2..1087)
DNA (1086bp) protein (362aa)
ResB protein required for cytochrome c biosynthesis n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DYQ8_METI4
resB; ResB protein required for cytochrome c biosynthesis
ResB protein required for cytochrome c biosynthesis {ECO:0000313|EMBL:ACD82430.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilac
13_2_20cm_scaffold_1080_2
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1179..1925)
DNA (747bp) protein (249aa)
ResB protein required for cytochrome c biosynthesis n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JXV5_9BACT
resB; ResB protein required for cytochrome c biosynthesis Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
resB; ResB protein required for cytochrome c biosynthesis
13_2_20cm_scaffold_1080_3
Acidobacteriaceae bacterium KBS 83, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(2151..2570)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003708F60
13_2_20cm_scaffold_1080_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2703..4511)
DNA (1809bp) protein (603aa)
cytochrome c551 peroxidase (EC:1.11.1.5)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036EF8B3
Uncharacterized protein {ECO:0000313|EMBL:KJC55703.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
13_2_20cm_scaffold_1080_5
unknown

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comp(4587..4910)
DNA (324bp) protein (108aa)

This feature has no annotations

13_2_20cm_scaffold_1080_6
unknown

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5156..5290
DNA (135bp) protein (45aa)

This feature has no annotations

13_2_20cm_scaffold_1080_7
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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5299..7011
DNA (1713bp) protein (571aa)
ABC-type transport system involved in cytochrome c biogenesis, permease component n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K183_9BACT rbh
ABC transporter permease {ECO:0000313|EMBL:KIE58520.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;"
cytochrome c assembly protein
13_2_20cm_scaffold_1080_8
unknown

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7266..7502
DNA (237bp) protein (79aa)

This feature has no annotations

13_2_20cm_scaffold_1080_9
unknown

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comp(7587..8087)
DNA (501bp) protein (167aa)

This feature has no annotations

13_2_20cm_scaffold_1080_10
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

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comp(8211..8726)
DNA (516bp) protein (172aa)
Appr-1-p processing domain protein n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EGM7_AMICL
Appr-1-p processing protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:ADE57709.1}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium.;" source="Aminobacterium co
13_2_20cm_scaffold_1080_11
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(8865..9515)
DNA (651bp) protein (217aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxal 5'-phosphate synthase {ECO:0000256|SAAS:SAAS00025317}; EC=1.4.3.5 {ECO:0000256|SAAS:SAAS00025317};; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae;
Pyridoxamine 5'-phosphate oxidase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQF1_ROSS1
13_2_20cm_scaffold_1080_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(9569..10750)
DNA (1182bp) protein (394aa)
Cysteine desulfurase NifS n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTM6_9BACT
Cysteine desulfurase NifS {ECO:0000313|EMBL:EDY21880.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
cysteine desulfurase NifS
13_2_20cm_scaffold_1080_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10859..11956
DNA (1098bp) protein (366aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
histidinol-phosphate aminotransferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744961 rbh
histidinol-phosphate aminotransferase
13_2_20cm_scaffold_1080_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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12133..13476
DNA (1344bp) protein (448aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" sourc
tRNA modification GTPase MnmE n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D719_9BACT
tRNA modification GTPase TrmE
13_2_20cm_scaffold_1080_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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13635..14645
DNA (1011bp) protein (337aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:00
dihydroorotate dehydrogenase (EC:1.3.3.1)
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D718_9BACT
13_2_20cm_scaffold_1080_16
Lawsonia intracellularis, Lawsonia, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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14718..15416
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Lawsonia intracellularis RepID=M1GG23_LAWIN
hypothetical protein
NA {ECO:0000313|EMBL:CAJ54140.1}; TaxID=363253 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.;" source="Lawsonia intracellularis (strain PHE
13_2_20cm_scaffold_1080_17

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15587..15874
DNA (288bp) protein (96aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49424.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_2_20cm_scaffold_1080_18

Not on your lists

comp(15958..16260)
DNA (303bp) protein (101aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49423.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_2_20cm_scaffold_1080_19

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comp(16257..16838)
DNA (582bp) protein (194aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJL6_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49422.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ECF subfamily RNA polymerase sigma-24 factor
Displaying 19 items

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