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13_2_20cm_scaffold_783

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_783_1
unknown

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1..90
DNA (90bp) protein (30aa)

This feature has no annotations

13_2_20cm_scaffold_783_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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174..887
DNA (714bp) protein (238aa)
had-superfamily hydrolase, subfamily iia; K02566 NagD protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
HAD-superfamily hydrolase, subfamily IIA id=4644046 bin=GWF2_Methylomirabilis_70_14 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
had-superfamily hydrolase, subfamily iia
13_2_20cm_scaffold_783_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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884..2506
DNA (1623bp) protein (541aa)
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FAD dependent oxidoreductase id=4903986 bin=GWC2_Methylomirabilis_70_16 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FAD dependent oxidoreductase
13_2_20cm_scaffold_783_4
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2579..3877
DNA (1299bp) protein (433aa)
Extracellular solute-binding protein, family 1 n=1 Tax=alpha proteobacterium BAL199 RepID=A8U109_9PROT rbh
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:EDP61946.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
extracellular solute-binding protein
13_2_20cm_scaffold_783_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3886..4767
DNA (882bp) protein (294aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K1Y4_9PROT rbh
Glycerol-3-phosphate transporter permease {ECO:0000313|EMBL:EWY40976.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" sourc
ugpA; sn-glycerol-3-phosphate transport system permease protein
13_2_20cm_scaffold_783_6
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4767..5615
DNA (849bp) protein (283aa)
twin-arginine translocation pathway signal protein; K05815 sn-glycerol 3-phosphate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
Twin-arginine translocation pathway signal id=1270318 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
twin-arginine translocation pathway signal protein
13_2_20cm_scaffold_783_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5612..6364
DNA (753bp) protein (251aa)
glycerophosphodiester phosphodiesterase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycerophosphodiester phosphodiesterase family protein id=4980422 bin=GWA2_Methylomirabilis_73_35 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycerophosphodiester phosphodiesterase
13_2_20cm_scaffold_783_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6378..7904
DNA (1527bp) protein (509aa)
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30] Tax=GWA2_Rokubacteria_73_35_curated
glycerol kinase (EC:2.7.1.30)
Glycerol kinase id=4980423 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_783_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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7996..9105
DNA (1110bp) protein (370aa)
Extracellular solute-binding protein, family 1 id=4644135 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
extracellular solute-binding protein Tax=GWA2_Rokubacteria_70_23_curated
extracellular solute-binding protein
13_2_20cm_scaffold_783_10
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9111..9767
DNA (657bp) protein (219aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262) Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Xanthobacteraceae RepID=UPI00036FD9ED
13_2_20cm_scaffold_783_11
bacterium YEK0313, Bacteria

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9745..10059
DNA (315bp) protein (105aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89M19_BRADU
13_2_20cm_scaffold_783_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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10056..11129
DNA (1074bp) protein (358aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625920 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=CSP1_6_Rokubacteria
ABC transporter-like protein
13_2_20cm_scaffold_783_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11110..12816
DNA (1707bp) protein (569aa)
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein id=14625921 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein Tax=CSP1_6_Rokubacteria
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_783_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12871..13101
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP synthase-associated magnesium import membrane protein AtpZ id=4980424 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
magnesium transporter
13_2_20cm_scaffold_783_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13088..13456
DNA (369bp) protein (123aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4980425 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_783_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13456..14223
DNA (768bp) protein (256aa)
ATP synthase subunit A (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP synthase subunit A (EC:3.6.3.14) id=14625924 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
ATP synthase subunit A (EC:3.6.3.14)
13_2_20cm_scaffold_783_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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14253..14528
DNA (276bp) protein (92aa)
ATP synthase subunit C, membrane-bound, F0 sector; DCCD-binding (EC:3.6.3.14) Tax=GWC2_Rokubacteria_70_16_curated
ATP synthase subunit C, membrane-bound, F0 sector; DCCD-binding (EC:3.6.3.14)
ATP synthase subunit C, membrane-bound, F0 sector DCCD-binding (Modular protein) id=4246292 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_783_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14617..15225
DNA (609bp) protein (203aa)
Redox-sensing transcriptional repressor rex id=4980428 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rex; redox-sensing transcriptional repressor rex Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rex; redox-sensing transcriptional repressor rex
13_2_20cm_scaffold_783_19
unknown

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comp(15893..16288)
DNA (396bp) protein (132aa)

This feature has no annotations

13_2_20cm_scaffold_783_20
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

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comp(16463..16801)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=GWF2_Lentisphaerae_45_14_curated
13_2_20cm_scaffold_783_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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16867..18444
DNA (1578bp) protein (526aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=GWA2_Rokubacteria_73_35_curated
Transcription-repair coupling factor id=4980429 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription-repair coupling factor
13_2_20cm_scaffold_783_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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18441..19511
DNA (1071bp) protein (357aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=GWA2_Rokubacteria_73_35_curated
PpiC-type peptidyl-prolyl cis-trans isomerase id=4980430 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PpiC-type peptidyl-prolyl cis-trans isomerase
13_2_20cm_scaffold_783_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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19655..20983
DNA (1329bp) protein (443aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rho; transcription termination factor Rho id=14625929 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
transcription termination factor Rho
13_2_20cm_scaffold_783_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


21088..21303
DNA (216bp) protein (72aa)
LSU ribosomal protein L31P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L31 id=4246284 bin=GWC2_Methylomirabilis_70_16 species=Faecalibacterium prausnitzii genus=Faecalibacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
LSU ribosomal protein L31P
13_2_20cm_scaffold_783_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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21342..22415
DNA (1074bp) protein (358aa)
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide chain release factor 1 id=4980433 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prfA; peptide chain release factor 1
13_2_20cm_scaffold_783_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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22412..23305
DNA (894bp) protein (298aa)
protein-(glutamine-N5) methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Release factor glutamine methyltransferase id=4980434 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hemK; peptide chain release factor methyltransferase
13_2_20cm_scaffold_783_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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23309..24562
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=4980435 bin=GWA2_Methylomirabilis_73_35 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_783_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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24559..25254
DNA (696bp) protein (232aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) id=14625934 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
13_2_20cm_scaffold_783_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25251..26570
DNA (1320bp) protein (440aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase id=4246279 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_783_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26567..27172
DNA (606bp) protein (202aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=14625936 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hisB; imidazoleglycerol-phosphate dehydratase
Displaying items 1-30 of 46 in total

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