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13_2_20cm_scaffold_827

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_827_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..178)
DNA (177bp) protein (59aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_2_20cm_scaffold_827_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(340..945)
DNA (606bp) protein (202aa)
alpha/beta hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3033629 bin=GWC2_Methylomirabilis_70_16 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_827_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1172..1507)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037792A1
Uncharacterized protein {ECO:0000313|EMBL:ETX07916.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_2_20cm_scaffold_827_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1519..2004)
DNA (486bp) protein (162aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1746153 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_827_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2501..2650
DNA (150bp) protein (50aa)
hypothetical protein
Mandelate racemase/muconate lactonizing protein id=4930050 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mandelate racemase/muconate lactonizing protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_827_6
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2775..3158
DNA (384bp) protein (128aa)
CheA signal transduction histidine kinase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTF7_9GAMM
CheA signal transduction histidine kinase {ECO:0000313|EMBL:EIJ34650.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thioth
response regulator receiver protein
13_2_20cm_scaffold_827_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3163..3699)
DNA (537bp) protein (179aa)
carboxymuconolactone decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4852964 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
carboxymuconolactone decarboxylase
13_2_20cm_scaffold_827_8
unknown

Not on your lists

comp(3700..3954)
DNA (255bp) protein (85aa)

This feature has no annotations

13_2_20cm_scaffold_827_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3967..4761)
DNA (795bp) protein (265aa)
paaG; enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Enoyl-CoA hydratase id=1746157 bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
paaG; enoyl-CoA hydratase
13_2_20cm_scaffold_827_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4825..5271
DNA (447bp) protein (149aa)
id=14626712 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_827_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5406..6398)
DNA (993bp) protein (331aa)
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidoglycan-associated lipoprotein id=2546000 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein
13_2_20cm_scaffold_827_12
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6599..7411)
DNA (813bp) protein (271aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QFK1_9FIRM
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EKP95811.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incer
periplasmic binding protein
13_2_20cm_scaffold_827_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7408..8112)
DNA (705bp) protein (235aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA id=3784124 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K07025 putative hydrolase of the HAD superfamily Tax=GWC2_Rokubacteria_70_16_curated
putative hydrolase
13_2_20cm_scaffold_827_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8109..8771)
DNA (663bp) protein (221aa)
TENA/THI-4 family; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional activator, TenA family id=4231331 bin=GWC2_Methylomirabilis_70_24 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
TenA family transcription regulator
13_2_20cm_scaffold_827_15
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8804..9577
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036BA46E
Uncharacterized protein {ECO:0000313|EMBL:ETX02825.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_2_20cm_scaffold_827_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9632..10156
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4029898 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ECF subfamily RNA polymerase sigma-24 subunit
13_2_20cm_scaffold_827_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10153..11109
DNA (957bp) protein (319aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methylated-DNA--protein-cysteine methyltransferase id=4554993 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase
13_2_20cm_scaffold_827_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11165..11503
DNA (339bp) protein (113aa)
id=4554997 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4554997 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_827_19
unknown

Not on your lists

11503..11709
DNA (207bp) protein (69aa)

This feature has no annotations

13_2_20cm_scaffold_827_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11780..12883)
DNA (1104bp) protein (368aa)
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] id=14627216 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
alcohol dehydrogenase class III
13_2_20cm_scaffold_827_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12880..13728)
DNA (849bp) protein (283aa)
Alpha/beta hydrolase fold family protein 8 id=3868196 bin=GWC2_Methylomirabilis_70_24 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alpha/beta hydrolase fold protein Tax=GWC2_Rokubacteria_70_16_curated
alpha/beta hydrolase fold protein
13_2_20cm_scaffold_827_22
unknown

Not on your lists

13858..14076
DNA (219bp) protein (73aa)

This feature has no annotations

13_2_20cm_scaffold_827_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14079..15173)
DNA (1095bp) protein (365aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Major facilitator superfamily MFS_1 transporter id=4930061 bin=GWA2_Methylomirabilis_73_35 species=Sporosarcina newyorkensis genus=Sporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily protein
13_2_20cm_scaffold_827_24
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15217..15405)
DNA (189bp) protein (63aa)
Glutaredoxin n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NJ95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETW98310.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
glutaredoxin
13_2_20cm_scaffold_827_25
R_NC10_66_22, NC10, Bacteria

Not on your lists

15463..16893
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI00037A1612
putative multidrag resistance protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
EmrB/QacA subfamily drug resistance transporter
13_2_20cm_scaffold_827_26
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(17037..17585)
DNA (549bp) protein (183aa)
Periplasmic protein n=1 Tax=Enterobacter aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) RepID=G0E409_ENTAK
osmY; OsmY; K04065 hyperosmotically inducible periplasmic protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Osmotically inducible protein OsmY
13_2_20cm_scaffold_827_27
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

comp(17602..18183)
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
hypothetical protein id=3472292 bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
13_2_20cm_scaffold_827_28
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18387..18578
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003718233
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48437.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
Displaying 28 items

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