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13_2_20cm_scaffold_2371

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2371_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(220..678)
DNA (459bp) protein (153aa)
anti-ECFsigma factor, ChrR id=14429568 bin=bin3_NC10 species=Afipia birgiae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
anti-ECFsigma factor, ChrR Tax=CSP1_5_NC10
Germin-like protein subfamily 2 member 2 Flags: Precursor
13_2_20cm_scaffold_2371_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(720..1100)
DNA (381bp) protein (127aa)
hypothetical protein; K07068 Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3677765 bin=GWF2_Methylomirabilis_70_14 species=Methanocaldococcus villosus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nucleic-acid-binding protein
13_2_20cm_scaffold_2371_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1093..2247)
DNA (1155bp) protein (385aa)
acetyl-CoA C-acyltransferase 8 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Propanoyl-CoA C-acyltransferase id=2338963 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acetyl-CoA C-acyltransferase 8
13_2_20cm_scaffold_2371_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2269..3264
DNA (996bp) protein (332aa)
Predicted dehydrogenases and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2338962 bin=GWA2_Methylomirabilis_73_35 species=Subdoligranulum sp. 4_3_54A2FAA genus=Subdoligranulum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Oxidoreductase
13_2_20cm_scaffold_2371_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4194..4649
DNA (456bp) protein (152aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=2338961 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2371_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4650..5018)
DNA (369bp) protein (123aa)
Response regulator receiver domain n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ08_SYNAS
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator receiver domain-containing protein
13_2_20cm_scaffold_2371_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5043..6095)
DNA (1053bp) protein (351aa)
response regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator receiver modulated metal dependent phosphohydrolase id=14626650 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
response regulator
13_2_20cm_scaffold_2371_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6067..7053)
DNA (987bp) protein (329aa)
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase id=2338959 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
diguanylate cyclase
13_2_20cm_scaffold_2371_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7117..7353
DNA (237bp) protein (79aa)
SirA family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
SirA family protein id=2338958 bin=GWA2_Methylomirabilis_73_35 species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SirA family protein
13_2_20cm_scaffold_2371_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7313..8521
DNA (1209bp) protein (403aa)
class V aminotransferase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aminotransferase class V id=2338873 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysteine desulfurase
13_2_20cm_scaffold_2371_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8523..9284
DNA (762bp) protein (254aa)
Hydrolase, haloacid dehalogenase-like family id=2338871 bin=GWA2_Methylomirabilis_73_35 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
haloacid dehalogenase domain-containing protein hydrolase Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_2371_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9288..9737
DNA (450bp) protein (150aa)
hypothetical protein id=2338870 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_scaffold_2371_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9809..10450)
DNA (642bp) protein (214aa)
NADPH-dependent F420 reductase; K06988 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADPH-dependent F420 reductase id=2338864 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADPH-dependent F420 reductase
13_2_20cm_scaffold_2371_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10460..11227)
DNA (768bp) protein (256aa)
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] id=14628085 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
F420-dependent oxidoreductase
13_2_20cm_scaffold_2371_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11224..11895)
DNA (672bp) protein (224aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68] Tax=GWA2_Rokubacteria_73_35_curated
2-phospho-L-lactate guanylyltransferase id=2615049 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
2-phospho-L-lactate guanylyltransferase CofC
13_2_20cm_scaffold_2371_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11892..12812)
DNA (921bp) protein (307aa)
2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-phospho-L-lactate transferase id=4348880 bin=GWF2_Methylomirabilis_70_14 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LPPG:FO 2-phospho-L-lactate transferase
13_2_20cm_scaffold_2371_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12814..13377)
DNA (564bp) protein (188aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=2338861 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2371_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13364..13651)
DNA (288bp) protein (96aa)
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional dual regulator HU-beta id=3762996 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupB; transcriptional dual regulator HU-beta
13_2_20cm_scaffold_2371_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13721..14986)
DNA (1266bp) protein (422aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
FO synthase subunit 2 id=3762998 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2371_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14964..16052)
DNA (1089bp) protein (363aa)
cofG; FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-] Tax=GWA2_Rokubacteria_73_35_curated
FO synthase subunit 1 id=3763000 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cofG; FO synthase subunit 1
13_2_20cm_scaffold_2371_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16049..17062)
DNA (1014bp) protein (338aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases id=3763002 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
luciferase-like protein Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_2_20cm_scaffold_2371_22
unknown

Not on your lists

17210..17431
DNA (222bp) protein (74aa)

This feature has no annotations

13_2_20cm_scaffold_2371_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17522..18955
DNA (1434bp) protein (478aa)
putative two-component histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine kinase id=1767179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_2_20cm_scaffold_2371_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18952..19296
DNA (345bp) protein (115aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=1767177 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2371_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19310..20800
DNA (1491bp) protein (497aa)
signal transduction histidine kinase NtrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal transduction histidine kinase, nitrogen specific, NtrB id=1767175 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase
13_2_20cm_scaffold_2371_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21500..22138
DNA (639bp) protein (213aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1767173 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=GWA2_Rokubacteria_73_35_curated
acetoacetate metabolism regulatory protein AtoC
13_2_20cm_scaffold_2371_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22314..22652
DNA (339bp) protein (113aa)
nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nitrogen regulatory protein P-II 1 id=1767171 bin=GWA2_Methylomirabilis_73_35 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrogen regulatory protein PII
13_2_20cm_scaffold_2371_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22674..24065
DNA (1392bp) protein (464aa)
amtB; ammonium transport protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ammonium transport protein (Amt family) id=4828258 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amtB; ammonium transport protein
13_2_20cm_scaffold_2371_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24163..25587
DNA (1425bp) protein (475aa)
glnA1; glutamine synthetase (EC:6.3.1.2)
glnA; glutamine synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glnA; glutamine synthetase id=14625787 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
13_2_20cm_scaffold_2371_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25825..26925)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035C8134
putative transposase for insertion sequence NGRIS-13h Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transposase for insertion sequence NGRIS-13h
Displaying items 1-30 of 49 in total

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