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13_2_20cm_scaffold_2676

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2676_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..864
DNA (864bp) protein (288aa)
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase id=4083674 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2676_2
unknown

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861..959
DNA (99bp) protein (33aa)

This feature has no annotations

13_2_20cm_scaffold_2676_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

956..1639
DNA (684bp) protein (228aa)
Cytochrome c oxidase subunit III subfamily id=4083670 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme/copper-type cytochrome/quinol oxidase, subunit 3 Tax=GWA2_Rokubacteria_73_35_curated
cytochrome C oxidase subunit III
13_2_20cm_scaffold_2676_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1636..1932
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4083667 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2676_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1929..2546
DNA (618bp) protein (206aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
coxP; Cytochrome c oxidase subunit III (EC:1.9.3.1)
Cytochrome c oxidase subunit III id=4083665 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2676_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2561..2890
DNA (330bp) protein (110aa)
Caa(3)-type oxidase, subunit IV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Caa(3)-type oxidase, subunit IV id=4083662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
caa(3)-type oxidase, subunit IV
13_2_20cm_scaffold_2676_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3030..3290
DNA (261bp) protein (87aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14429807 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
13_2_20cm_scaffold_2676_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3308..4033
DNA (726bp) protein (242aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipoprotein id=4083660 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative lipoprotein
13_2_20cm_scaffold_2676_9
unknown

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comp(5488..5832)
DNA (345bp) protein (115aa)

This feature has no annotations

13_2_20cm_scaffold_2676_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6027..7322
DNA (1296bp) protein (432aa)
putative heme d1 biosynthesis radical SAM protein NirJ2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
radical SAM protein id=14626559 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
radical SAM protein
13_2_20cm_scaffold_2676_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7289..7768
DNA (480bp) protein (160aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4388292 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2676_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7842..8702
DNA (861bp) protein (287aa)
mrp; putative ATPase; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ATPase, Mrp homolog id=4388291 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ParA/MinD ATPase-like protein
13_2_20cm_scaffold_2676_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8779..9240
DNA (462bp) protein (154aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NUDIX hydrolase id=4388290 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ADP-ribose pyrophosphatase
13_2_20cm_scaffold_2676_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9227..9922)
DNA (696bp) protein (232aa)
id=3659328 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626564 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_2676_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9912..10169)
DNA (258bp) protein (86aa)
id=3659327 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4123400 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_2676_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10279..11154
DNA (876bp) protein (292aa)
Putative uncharacterized protein id=4388235 bin=GWA2_Methylomirabilis_73_35 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_2676_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11151..12035
DNA (885bp) protein (295aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidase, M23/M37 family id=4388234 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_2676_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12032..12274)
DNA (243bp) protein (81aa)
Uncharacterized protein id=4388233 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_2676_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12352..13203)
DNA (852bp) protein (284aa)
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21)
Farnesyl-diphosphate farnesyltransferase id=4388232 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2676_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13308..13694)
DNA (387bp) protein (129aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4388230 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2676_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14163..14555
DNA (393bp) protein (131aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4388228 bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2676_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14572..15363
DNA (792bp) protein (264aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] Tax=GWC2_Rokubacteria_70_16_curated
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-)
Oxidoreductase family protein id=4638236 bin=GWC2_Methylomirabilis_70_16 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2676_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15408..15692
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peroxiredoxin id=4388219 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2676_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16433..17263
DNA (831bp) protein (277aa)
Short-chain dehydrogenase/reductase SDR id=3951922 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR Tax=GWA2_Rokubacteria_70_23_curated
short-chain dehydrogenase/reductase SDR
13_2_20cm_scaffold_2676_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17260..17748
DNA (489bp) protein (163aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein tyrosine phosphatase id=4887997 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
protein tyrosine phosphatase
13_2_20cm_scaffold_2676_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17733..18722)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035E80A3
ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
peptide ABC transporter substrate-binding protein
13_2_20cm_scaffold_2676_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18724..19695)
DNA (972bp) protein (324aa)
Oligopeptide ABC transporter ATP-binding protein id=4621968 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
oligopeptide/dipeptide ABC transporter ATPase
13_2_20cm_scaffold_2676_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19692..20576)
DNA (885bp) protein (295aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4621967 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2951; ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
dppC4; dipeptide transport system permease DppC
13_2_20cm_scaffold_2676_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20591..21445)
DNA (855bp) protein (285aa)
nickel-transporting ATPase (EC:3.6.3.24); K02033 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter permease id=4621966 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_2_20cm_scaffold_2676_30

Not on your lists

comp(21573..22805)
DNA (1233bp) protein (411aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
Displaying 30 items

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