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13_2_20cm_scaffold_355

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_355_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

3..851
DNA (849bp) protein (283aa)
HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
HflC protein id=2905914 bin=GWC2_Methylomirabilis_70_24 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_355_2

Not on your lists

954..1937
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000375B75D
Uncharacterized protein {ECO:0000313|EMBL:KKN07968.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative hydrolase
13_2_20cm_scaffold_355_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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2023..4182
DNA (2160bp) protein (720aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12UN0_METBU
Uncharacterized protein {ECO:0000313|EMBL:ETW95608.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
13_2_20cm_scaffold_355_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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4179..5078
DNA (900bp) protein (300aa)
hypothetical protein n=2 Tax=unclassified candidate division EM 19 RepID=UPI000363BFB8
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
13_2_20cm_scaffold_355_5
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

5082..6059
DNA (978bp) protein (326aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-] Tax=CG_Proteo_01
HflK protein id=2988052 bin=GWF2_Lentisphaerae_52_8 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
HflK protein
13_2_20cm_scaffold_355_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6147..7004)
DNA (858bp) protein (286aa)
UPF0761 membrane protein DSC_12970 id=3301612 bin=GWC2_Methylomirabilis_70_16 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
rbn; ribonuclease BN/unknown domain fusion protein; K07058 membrane protein Tax=GWC2_Rokubacteria_70_16_curated
tRNA-processing RNAse BN
13_2_20cm_scaffold_355_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7041..8867)
DNA (1827bp) protein (609aa)
aldehyde ferredoxin oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aldehyde ferredoxin oxidoreductase id=3789300 bin=GWA2_Methylomirabilis_73_35 species=halophilic archaeon DL31 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_355_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8864..11845)
DNA (2982bp) protein (994aa)
Lytic transglycosylase id=3789302 bin=GWA2_Methylomirabilis_73_35 species=Danio rerio genus=Danio taxon_order=Cypriniformes taxon_class=Actinopterygii phylum=Chordata tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
uncharacterized LOC100535581 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_355_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(11857..13239)
DNA (1383bp) protein (461aa)
outer membrane assembly lipoprotein YfiO Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Outer membrane assembly lipoprotein YfiO id=3789304 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
outer membrane assembly lipoprotein YfiO
13_2_20cm_scaffold_355_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13293..13931
DNA (639bp) protein (213aa)
phosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD-superfamily hydrolase, subfamily IA, variant 3 id=3789308 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_355_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13928..15289
DNA (1362bp) protein (454aa)
rarA; polynucleotide enzyme with nucleotide triphosphate hydrolase domain Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain id=4329549 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rarA; polynucleotide enzyme with nucleotide triphosphate hydrolase domain
13_2_20cm_scaffold_355_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15292..15735
DNA (444bp) protein (148aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3979826 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_355_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15741..16865
DNA (1125bp) protein (375aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] id=14626264 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
D-alanine--D-alanine ligase (EC:6.3.2.4)
13_2_20cm_scaffold_355_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16856..17968
DNA (1113bp) protein (371aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase id=3979811 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_355_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18191..18835)
DNA (645bp) protein (215aa)
Uncharacterized protein id=3979808 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_355_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18912..19883
DNA (972bp) protein (324aa)
ABC transporter substrate-binding protein
Extracellular solute-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein id=14626267 bin=bin7_NC10_sister species=Burkholderia sp. WSM4176 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
13_2_20cm_scaffold_355_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19861..20436)
DNA (576bp) protein (192aa)
maf protein; K06287 septum formation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MAF protein id=3979804 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
maf protein
13_2_20cm_scaffold_355_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20534..20800)
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3979802 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_355_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20813..21733)
DNA (921bp) protein (307aa)
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16) id=14626269 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16)
13_2_20cm_scaffold_355_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21730..22125)
DNA (396bp) protein (132aa)
S-adenosylmethionine decarboxylase (EC:4.1.1.50)
S-adenosylmethionine decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S-adenosylmethionine decarboxylase proenzyme id=3979797 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_355_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

22386..23252
DNA (867bp) protein (289aa)
agmatinase (EC:3.5.3.11); K01480 agmatinase [EC:3.5.3.11] id=14626272 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
agmatinase (EC:3.5.3.11); K01480 agmatinase [EC:3.5.3.11] Tax=CSP1_6_Rokubacteria
agmatinase (EC:3.5.3.11)
13_2_20cm_scaffold_355_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23249..24025
DNA (777bp) protein (259aa)
Methyltransferase type 11 id=4020054 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
methyltransferase type 11 Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase type 11
13_2_20cm_scaffold_355_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24093..25271
DNA (1179bp) protein (393aa)
SAM-dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methyltransferase small; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] id=14626274 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
SAM-dependent methyltransferase
13_2_20cm_scaffold_355_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25456..26466)
DNA (1011bp) protein (337aa)
putative Zn-dependent hydrolase of beta-lactamase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4020049 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia sp. YI23 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_355_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26490..27773)
DNA (1284bp) protein (428aa)
multi-sensor hybrid histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWA2_Rokubacteria_73_35_curated
Multi-sensor hybrid histidine kinase id=4020048 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
13_2_20cm_scaffold_355_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(27792..28625)
DNA (834bp) protein (278aa)
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=14626276 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
alanyl-tRNA synthetase
Displaying 26 items

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