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13_2_20cm_scaffold_3737

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3737_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..669)
DNA (669bp) protein (223aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase Tax=GWA2_Rokubacteria_73_35_curated
4-alpha-glucanotransferase id=3879949 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3737_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1563..2432)
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0042 nucleotide-binding protein DAMO_1192 id=3879946 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_3737_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2462..3925)
DNA (1464bp) protein (488aa)
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma-54 factor id=3879943 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoN; RNA polymerase sigma-54 factor
13_2_20cm_scaffold_3737_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3946..4668)
DNA (723bp) protein (241aa)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily id=3879942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
13_2_20cm_scaffold_3737_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4686..5252)
DNA (567bp) protein (189aa)
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA Tax=GWA2_Rokubacteria_73_35_curated
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA id=14625759 bin=bin7_NC10_sister species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
lipopolysaccharide transport periplasmic protein LptA
13_2_20cm_scaffold_3737_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5249..5830)
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3879938 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3737_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5913..6734)
DNA (822bp) protein (274aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) Tax=GWA2_Rokubacteria_73_35_curated
Arabinose 5-phosphate isomerase id=3879936 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
kdsD; arabinose-5-phosphate isomerase
13_2_20cm_scaffold_3737_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7899..9500)
DNA (1602bp) protein (534aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) id=14625764 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
13_2_20cm_scaffold_3737_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9502..11070)
DNA (1569bp) protein (523aa)
poly A polymerase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] id=14625765 bin=bin7_NC10_sister species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin7_NC10_sister organism_group=NC10
poly A polymerase
13_2_20cm_scaffold_3737_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11067..11951)
DNA (885bp) protein (295aa)
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD id=14625766 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD Tax=CSP1_6_Rokubacteria
tyrosine recombinase XerD
13_2_20cm_scaffold_3737_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12056..13711)
DNA (1656bp) protein (552aa)
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane protein MviN id=2720726 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
integral membrane protein MviN
13_2_20cm_scaffold_3737_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


13744..13995
DNA (252bp) protein (84aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S20 id=2720727 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S20
13_2_20cm_scaffold_3737_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13986..15323)
DNA (1338bp) protein (446aa)
Putative uncharacterized protein id=2720728 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_3737_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15320..16273)
DNA (954bp) protein (318aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative DNA polymerase III, delta subunit id=2720729 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3737_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16328..16768)
DNA (441bp) protein (147aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2720730 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3737_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(16765..19251)
DNA (2487bp) protein (829aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Leucine--tRNA ligase id=4527058 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
leuS; leucyl-tRNA ligase
13_2_20cm_scaffold_3737_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19420..19674)
DNA (255bp) protein (85aa)
hypothetical protein id=2720732 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_3737_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19717..20112)
DNA (396bp) protein (132aa)
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UvrABC system protein C id=2720733 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
excinuclease ABC subunit C
Displaying 18 items

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