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13_2_20cm_scaffold_5071

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_5071_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(1..570)
DNA (570bp) protein (190aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S4 id=4666314 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S4
13_2_20cm_scaffold_5071_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(581..988)
DNA (408bp) protein (136aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
13_2_20cm_scaffold_5071_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(992..1408)
DNA (417bp) protein (139aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S13 id=4666312 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S13
13_2_20cm_scaffold_5071_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1563..1676)
DNA (114bp) protein (38aa)
hypothetical protein; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L36 id=4666311 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_5071_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1702..1920)
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=14625536 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
infA; translation initiation factor IF-1
13_2_20cm_scaffold_5071_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1917..2666)
DNA (750bp) protein (250aa)
map; methionine aminopeptidase (EC:3.4.11.18) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I (EC:3.4.11.18)
13_2_20cm_scaffold_5071_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2671..4608)
DNA (1938bp) protein (646aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_2_20cm_scaffold_5071_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(4605..5012)
DNA (408bp) protein (136aa)
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rplO; 50S ribosomal protein L15
13_2_20cm_scaffold_5071_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(5002..5160)
DNA (159bp) protein (53aa)
50S ribosomal protein L30 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30
13_2_20cm_scaffold_5071_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(5171..5371)
DNA (201bp) protein (67aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S5
13_2_20cm_scaffold_5071_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(5699..6016)
DNA (318bp) protein (106aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4716766 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
13_2_20cm_scaffold_5071_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(6013..6561)
DNA (549bp) protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L6 id=4666302 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L6
13_2_20cm_scaffold_5071_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(6568..6963)
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S8 id=4716768 bin=GWC2_Methylomirabilis_70_16 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsH; 30S ribosomal protein S8
13_2_20cm_scaffold_5071_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(6968..7153)
DNA (186bp) protein (62aa)
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
rpsZ; 30S ribosomal protein S14
13_2_20cm_scaffold_5071_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(7161..7844)
DNA (684bp) protein (228aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4799432 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplE; 50S ribosomal protein L5
13_2_20cm_scaffold_5071_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(7850..8179)
DNA (330bp) protein (110aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L24
13_2_20cm_scaffold_5071_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(8179..8547)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=4666299 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rplN; 50S ribosomal protein L14
13_2_20cm_scaffold_5071_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(8552..8800)
DNA (249bp) protein (83aa)
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S17 id=4666298 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17
13_2_20cm_scaffold_5071_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(8805..8993)
DNA (189bp) protein (63aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L29 id=4666297 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmC; 50S ribosomal protein L29
13_2_20cm_scaffold_5071_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(9061..9477)
DNA (417bp) protein (139aa)
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L16 id=4716775 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplP; 50S ribosomal protein L16
13_2_20cm_scaffold_5071_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(9490..10134)
DNA (645bp) protein (215aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=GWA2_Rokubacteria_73_35_curated
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=14625519 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S3
13_2_20cm_scaffold_5071_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(10137..10667)
DNA (531bp) protein (177aa)
ribosomal protein L22, bacterial type Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L22 id=4666294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplV; 50S ribosomal protein L22
13_2_20cm_scaffold_5071_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(10672..10965)
DNA (294bp) protein (98aa)
SSU ribosomal protein S19p (S15e) id=4666293 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=GWA2_Rokubacteria_73_35_curated
rpsS; 30S ribosomal protein S19
13_2_20cm_scaffold_5071_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(10975..11520)
DNA (546bp) protein (182aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L2 id=4517123 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L2
Displaying 24 items

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