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13_2_20cm_2_scaffold_1417

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1417_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3..398
DNA (396bp) protein (132aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y4_GEMAT
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor
13_2_20cm_2_scaffold_1417_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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504..1928
DNA (1425bp) protein (475aa)
glcD; glycolate oxidase subunit GlcD; K00104 glycolate oxidase [EC:1.1.3.15] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Glycolate oxidase subunit GlcD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y2_GEMAT
FAD linked oxidase domain protein
13_2_20cm_2_scaffold_1417_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1925..3133
DNA (1209bp) protein (403aa)
Glycolate oxidase subunit n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NCA8_GLOVI
glcE; glycolate oxidase subunit Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
FAD linked oxidase domain-containing protein
13_2_20cm_2_scaffold_1417_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3130..4254
DNA (1125bp) protein (375aa)
Glycolate oxidase iron-sulfur subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Y0_GEMAT
glcF; glycolate oxidase iron-sulfur subunit
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auran
13_2_20cm_2_scaffold_1417_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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4251..5108
DNA (858bp) protein (286aa)
Oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22) Tax=GWC2_Gemmatimonadetes_71_10_curated
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4X502_PSEDE
Oxygen-independent coproporphyrinogen III oxidase
13_2_20cm_2_scaffold_1417_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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5105..5776
DNA (672bp) protein (224aa)
putative beta-phosphoglucomutase (EC:5.4.2.6) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
putative beta-phosphoglucomutase (EC:5.4.2.6)
Putative Beta-phosphoglucomutase id=1969952 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_2_20cm_2_scaffold_1417_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5773..6840
DNA (1068bp) protein (356aa)
folate-binding protein n=1 Tax=Patulibacter americanus RepID=UPI0003B6716F
putative aminomethyl transferase; K06980 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative aminomethyl transferase
13_2_20cm_2_scaffold_1417_8
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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6837..7799
DNA (963bp) protein (321aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R600_ISOPI
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADV63902.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera
13_2_20cm_2_scaffold_1417_9
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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8127..10940
DNA (2814bp) protein (938aa)
hypothetical protein id=16786537 bin=RBG_16_Aminicenantes_63_16_plus species=Alistipes sp. CAG:268 genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein Tax=RBG_16_Aminicenantes_63_16_curated
glycoside hydrolase
13_2_20cm_2_scaffold_1417_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10892..13657
DNA (2766bp) protein (922aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase id=2990033 bin=GWF1_Xanthomonadales_69_6 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
13_2_20cm_2_scaffold_1417_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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13676..15166
DNA (1491bp) protein (497aa)
chlI; magnesium chelatase subunit ChlI; K03405 magnesium chelatase subunit I [EC:6.6.1.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Magnesium chelatase subunit ChlI n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5X5_GEMAT
magnesium chelatase subunit ChlI
13_2_20cm_2_scaffold_1417_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

15191..16117
DNA (927bp) protein (309aa)
Putative uncharacterized protein orf126 n=2 Tax=Viunalikevirus RepID=G3M127_9CAUD
band 7 protein
slr1768; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_2_20cm_2_scaffold_1417_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

16177..16752
DNA (576bp) protein (192aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative uncharacterized protein id=3290479 bin=GWC2_Chloroflexi_73_18 species=Nocardiopsis dassonvillei genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
13_2_20cm_2_scaffold_1417_14
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(16778..17884)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RJS4_MOOTA
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
hypothetical protein
13_2_20cm_2_scaffold_1417_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

18564..19862
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W8_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
von Willebrand factor type A
13_2_20cm_2_scaffold_1417_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19859..21199)
DNA (1341bp) protein (447aa)
Ammonium transporter NrgA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A872_GEMAT
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_1417_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21196..21591)
DNA (396bp) protein (132aa)
Nitrogen regulatory protein P-II n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A871_GEMAT
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:AHG93827.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_1417_18
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21588..22463)
DNA (876bp) protein (292aa)
Beta-lactamase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QP24_9DELT
Beta-lactamase {ECO:0000313|EMBL:EPX58313.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter
beta-lactamase
13_2_20cm_2_scaffold_1417_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

22498..26121
DNA (3624bp) protein (1208aa)
2-oxoglutarate dehydrogenase, E1 subunit; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
2-oxoglutarate dehydrogenase, E1 subunit n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCK1_CONWI
2-oxoglutarate dehydrogenase, E1 subunit
13_2_20cm_2_scaffold_1417_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26128..26706
DNA (579bp) protein (193aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5S9_GEMAT
hypothetical membrane protein; K02221 YggT family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function YGGT
13_2_20cm_2_scaffold_1417_21
unknown

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26703..26858
DNA (156bp) protein (52aa)

This feature has no annotations

13_2_20cm_2_scaffold_1417_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(26880..27722)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJK9_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_1417_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(27758..28279)
DNA (522bp) protein (174aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_2_scaffold_1417_24
unknown

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comp(28263..28649)
DNA (387bp) protein (129aa)

This feature has no annotations

13_2_20cm_2_scaffold_1417_25
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28646..29146)
DNA (501bp) protein (167aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R4N6_ISOPI
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADV60627.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source
13_2_20cm_2_scaffold_1417_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

29250..29465
DNA (216bp) protein (72aa)
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_cura
Methylenetetrahydrofolate reductase id=4709468 bin=GWC2_Deltaproteobacteria_66_88 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
Displaying 26 items

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