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13_1_40cm_scaffold_12468

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_12468_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..268
DNA (267bp) protein (89aa)
urease subunit alpha; K01428 urease subunit alpha [EC:3.5.1.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ureC; urease alpha subunit (EC:3.5.1.5)
Urease subunit alpha id=2317450 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_12468_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

352..798
DNA (447bp) protein (149aa)
ureE; urease accessory protein ureE; K03187 urease accessory protein Tax=GWA2_Rokubacteria_73_35_curated
Urease accessory protein ureE id=2317449 bin=GWA2_Methylomirabilis_73_35 species=Deinococcus gobiensis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ureE; urease accessory protein ureE
13_1_40cm_scaffold_12468_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

788..1480
DNA (693bp) protein (231aa)
Urease accessory protein UreF id=2317448 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Urease accessory protein UreF; K03188 urease accessory protein Tax=GWA2_Rokubacteria_73_35_curated
Urease accessory protein UreF
13_1_40cm_scaffold_12468_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1477..2112
DNA (636bp) protein (212aa)
Urease accessory protein UreG id=2317447 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ureG; urease accessory protein UreG; K03189 urease accessory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ureG; urease accessory protein UreG
13_1_40cm_scaffold_12468_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2057..2941
DNA (885bp) protein (295aa)
ureD; urease accessory protein ureD; K03190 urease accessory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Urease accessory protein UreD id=2317446 bin=GWA2_Methylomirabilis_73_35 species=Gordonia neofelifaecis genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
urease accessory protein ureD
13_1_40cm_scaffold_12468_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2961..3578
DNA (618bp) protein (206aa)
Putative phosphate transport regulator id=2317445 bin=GWA2_Methylomirabilis_73_35 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphate transport regulator; K07220 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
phosphate transport regulator
13_1_40cm_scaffold_12468_7
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3660..4103)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08QU6_STIAD
Uncharacterized protein {ECO:0000313|EMBL:EAU62856.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Sti
hypothetical protein
13_1_40cm_scaffold_12468_8
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(4230..4433)
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=RBG_16_NC10_65_8_curated
13_1_40cm_scaffold_12468_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4706..5785
DNA (1080bp) protein (360aa)
Methyltransferase type 11 id=4476340 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsM; arsenite S-adenosylmethyltransferase Tax=GWA2_Rokubacteria_70_23_curated
arsM; arsenite S-adenosylmethyltransferase
13_1_40cm_scaffold_12468_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5757..6323
DNA (567bp) protein (189aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4554898 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_12468_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6340..7368
DNA (1029bp) protein (343aa)
hypothetical protein; K06966 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Possible lysine decarboxylase family id=4476360 bin=GWF2_Methylomirabilis_70_14 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_12468_12
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

7715..9442
DNA (1728bp) protein (576aa)
NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nadE; glutamine-dependent NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] id=14625812 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NAD+ synthetase (EC:6.3.5.1)
13_1_40cm_scaffold_12468_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9589..10464
DNA (876bp) protein (292aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipid A biosynthesis acyltransferase id=4785123 bin=GWC2_Methylomirabilis_70_24 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative acyltransferase
13_1_40cm_scaffold_12468_14
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10482..11711
DNA (1230bp) protein (410aa)
Polyketide synthase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1FUC5_9PSEU
Polyketide synthase {ECO:0000313|EMBL:EOD62968.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 445
pks4-2; type-I PKS
13_1_40cm_scaffold_12468_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11873..13657)
DNA (1785bp) protein (595aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=GWA2_Rokubacteria_73_35_curated
Lipid A export ATP-binding/permease protein MsbA id=4600885 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phospholipid-lipopolysaccharide ABC transporter
13_1_40cm_scaffold_12468_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(13654..14772)
DNA (1119bp) protein (373aa)
group 1 glycosyl transferase id=14625816 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
group 1 glycosyl transferase
13_1_40cm_scaffold_12468_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14772..15854)
DNA (1083bp) protein (361aa)
lpsC; perosamine synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DegT/DnrJ/EryC1/StrS aminotransferase id=4600877 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxal phosphate-dependent protein
13_1_40cm_scaffold_12468_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15851..16336)
DNA (486bp) protein (162aa)
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
flavin reductase domain-containing protein id=14625818 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
putative oxidoreductase
13_1_40cm_scaffold_12468_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16657..17463
DNA (807bp) protein (269aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Mrp id=4759406 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
mrp; protein Mrp, putative ATPase (fragment)
13_1_40cm_scaffold_12468_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17468..18205
DNA (738bp) protein (246aa)
lon3; ATP-dependent protease La; K07157 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lon3; ATP-dependent protease La; K07157 id=14625820 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ATP-dependent protease La
13_1_40cm_scaffold_12468_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18154..18720
DNA (567bp) protein (189aa)
protease Do (EC:3.4.21.108) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protease Do (EC:3.4.21.108) id=14625822 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_1_40cm_scaffold_12468_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18896..19210
DNA (315bp) protein (105aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Putative uncharacterized protein id=4900379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP dicarboxylate transporter subunit DctP
Displaying 22 items

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