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13_1_40cm_scaffold_1927

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1927_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..686)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00031AB7CB
putative hydrolase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
amidohydrolase 2
13_1_40cm_scaffold_1927_2

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867..3980
DNA (3114bp) protein (1038aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003628BD1
Multidrug efflux system, subunit B {ECO:0000313|EMBL:CBH99475.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
acriflavin resistance protein
13_1_40cm_scaffold_1927_3
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3983..7021
DNA (3039bp) protein (1013aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037883D7
Multidrug transporter {ECO:0000313|EMBL:AJW47209.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilyti
mdtC; multidrug efflux system, subunit C
13_1_40cm_scaffold_1927_4
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7018..8400
DNA (1383bp) protein (461aa)
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA Tax=RBG_16_Deltaproteobacteria_47_11_curated
Efflux transporter, RND family, MFP subunit id=4900365 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RND family efflux transporter MFP subunit
13_1_40cm_scaffold_1927_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8435..9400)
DNA (966bp) protein (322aa)
Lactate dehydrogenase-related dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWA2_Rokubacteria_70_23_curated
Lactate dehydrogenase-related dehydrogenase (EC:1.1.1.26)
2-hydroxyacid dehydrogenase, putative id=4203221 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_1927_6
R_NC10_66_22, NC10, Bacteria

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comp(9397..9738)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000368083E
cupin 2 barrel-domain containing protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
cupin
13_1_40cm_scaffold_1927_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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9820..10320
DNA (501bp) protein (167aa)
Putative 2,3-dihydroxybiphenyl 1,2-dioxygenase protein n=1 Tax=uncultured bacterium CSL144 RepID=G4WVR1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETX09325.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
13_1_40cm_scaffold_1927_8
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(10262..10537)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037FA060
hypothetical protein; K06889 Tax=RBG_16_Acidobacteria_68_9_curated
hypothetical protein
13_1_40cm_scaffold_1927_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10546..11688)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00031AB7CB
amidohydrolase 2 Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
putative hydrolase
13_1_40cm_scaffold_1927_10
unknown

Not on your lists

12206..13303
DNA (1098bp) protein (366aa)

This feature has no annotations

13_1_40cm_scaffold_1927_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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13364..14689
DNA (1326bp) protein (442aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein
13_1_40cm_scaffold_1927_12
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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14700..16406
DNA (1707bp) protein (569aa)
Amidohydrolase 3 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V834_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:ETX08646.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
amidohydrolase 3
13_1_40cm_scaffold_1927_13

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comp(16622..18166)
DNA (1545bp) protein (515aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_scaffold_1927_14
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18321..18800
DNA (480bp) protein (160aa)
methionine-R-sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RBG_16_Planctomycetes_64_12_curated
methionine sulfoxide reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3B6E3
methionine-R-sulfoxide reductase
13_1_40cm_scaffold_1927_15
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19265..20395)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C1266
Uncharacterized protein {ECO:0000313|EMBL:ETX07579.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
monooxygenase
13_1_40cm_scaffold_1927_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20392..21207)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003786F65
Uncharacterized protein {ECO:0000313|EMBL:ETW95448.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Putative hydrolase
13_1_40cm_scaffold_1927_17

Not on your lists

comp(21300..22838)
DNA (1539bp) protein (513aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiB4; glutathione ABC transporter substrate binding protein GsiB
13_1_40cm_scaffold_1927_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(22850..23443)
DNA (594bp) protein (198aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Thiamine pyrophosphate enzyme-like TPP-binding protein id=4221512 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1927_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(23440..23970)
DNA (531bp) protein (177aa)
sulfopyruvate decarboxylase subunit alpha (EC:4.1.1.-); K01618 [EC:4.1.1.-] Tax=GWA2_Rokubacteria_70_23_curated
sulfopyruvate decarboxylase subunit alpha (EC:4.1.1.-)
Sulfopyruvate decarboxylase subunit alpha id=3950583 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_1927_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(23992..25029)
DNA (1038bp) protein (346aa)
Putative dioxygenase, 2OG-Fe(II) oxygenase superfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMT8_9PROT
2OG-Fe(II) oxygenase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2OG-Fe(II) oxygenase superfamily protein
13_1_40cm_scaffold_1927_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25053..26105)
DNA (1053bp) protein (351aa)
putative 2-dehydropantoate 2-reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-dehydropantoate 2-reductase id=4221488 bin=GWA2_Methylomirabilis_73_35 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1927_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26180..26992
DNA (813bp) protein (271aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=GWA2_Rokubacteria_73_35_curated
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA pseudouridylate synthase
13_1_40cm_scaffold_1927_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(27012..27692)
DNA (681bp) protein (227aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3327080 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1927_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28180..29931
DNA (1752bp) protein (584aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-) id=14627306 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
13_1_40cm_scaffold_1927_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(30046..31683)
DNA (1638bp) protein (546aa)
hypothetical protein; K06890 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thiamine pyrophosphate enzyme id=2783151 bin=GWF2_Methylomirabilis_70_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1927_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31867..32700
DNA (834bp) protein (278aa)
High-affinity nickel-transporter n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G575_GEOUR
Uncharacterized protein {ECO:0000313|EMBL:AHY52647.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium jap
high-affinity nickel-transporter
13_1_40cm_scaffold_1927_27
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32717..33736)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Paenibacillus elgii RepID=UPI000248C4FD
Uncharacterized protein {ECO:0000313|EMBL:KJB96523.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aer
hypothetical protein
13_1_40cm_scaffold_1927_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33733..34974)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036EA60E
Uncharacterized protein {ECO:0000313|EMBL:AHY52649.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium jap
hypothetical protein
13_1_40cm_scaffold_1927_29
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35058..36326)
DNA (1269bp) protein (423aa)
UPI0003CE36AB related cluster n=1 Tax=unknown RepID=UPI0003CE36AB
Uncharacterized protein {ECO:0000313|EMBL:KJB96525.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aer
13_1_40cm_scaffold_1927_30
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36456..37088)
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KJB96526.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aer
Displaying items 1-30 of 33 in total

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