ggKbase home page

13_1_40cm_scaffold_1178

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1178_1
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

1..246
DNA (246bp) protein (82aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9F9_SPHTD
phenazine biosynthesis protein PhzF family
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:ACZ40452.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sph
13_1_40cm_scaffold_1178_2
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

281..1327
DNA (1047bp) protein (349aa)
O-acetylserine (thiol)-lyase; K01738 cysteine synthase A [EC:2.5.1.47] Tax=RBG_16_Zixibacteria_53_22_curated
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A id=4734592 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1178_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1309..2286
DNA (978bp) protein (326aa)
gctA; glutaconate CoA transferase subunit A (EC:2.8.3.12); K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
gctA; glutaconate CoA transferase subunit A (EC:2.8.3.12)
Glutaconate CoA-transferase, subunit A n=2 Tax=Saccharopolyspora erythraea RepID=A4FJB8_SACEN
13_1_40cm_scaffold_1178_4
unknown

Not on your lists

comp(2642..2944)
DNA (303bp) protein (101aa)

This feature has no annotations

13_1_40cm_scaffold_1178_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3252..4061
DNA (810bp) protein (270aa)
Luciferase-like, subgroup n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JG53_HYPSM
luciferase-like protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
luciferase-like protein
13_1_40cm_scaffold_1178_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4420..4578
DNA (159bp) protein (53aa)
isochorismatase hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
isochorismatase hydrolase id=14625208 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_1178_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4589..5518
DNA (930bp) protein (310aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=3772775 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydrodipicolinate synthetase
13_1_40cm_scaffold_1178_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5640..6947
DNA (1308bp) protein (436aa)
amino acid/amide ABC transporter substrate-binding protein, HAAT family id=14625210 bin=bin7_NC10_sister species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=CSP1_6_Rokubacteria
extracellular ligand-binding receptor
13_1_40cm_scaffold_1178_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6944..7735
DNA (792bp) protein (264aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter related id=3772779 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
13_1_40cm_scaffold_1178_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7735..8442
DNA (708bp) protein (236aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter related protein id=3368248 bin=GWA2_Methylomirabilis_73_35 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F)
13_1_40cm_scaffold_1178_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8448..9314
DNA (867bp) protein (289aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=14625213 bin=bin7_NC10_sister species=Haloterrigena turkmenica genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_40cm_scaffold_1178_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9311..10264
DNA (954bp) protein (318aa)
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625214 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ABC transporter permease
13_1_40cm_scaffold_1178_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10276..10674)
DNA (399bp) protein (133aa)
multi-sensor hybrid histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C53D1
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
histidine kinase
13_1_40cm_scaffold_1178_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10779..12686)
DNA (1908bp) protein (636aa)
two component system sensor histidine kinase (EC:2.7.13.3)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1178_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12706..14334)
DNA (1629bp) protein (543aa)
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component Tax=GWA2_Rokubacteria_73_35_curated
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_scaffold_1178_16
unknown

Not on your lists

comp(14376..14507)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_scaffold_1178_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14792..15790)
DNA (999bp) protein (333aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system response regulator, sigma54-specific id=4571215 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_scaffold_1178_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15792..16121)
DNA (330bp) protein (110aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
two component system response regulator, sigma54-specific id=14627447 bin=bin7_NC10_sister species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
response regulator receiver modulated diguanylate cyclase
13_1_40cm_scaffold_1178_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(16195..16593)
DNA (399bp) protein (133aa)
automatic annotation Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Automatic annotation id=4571209 bin=GWF2_Methylomirabilis_70_14 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1178_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

16699..18219
DNA (1521bp) protein (507aa)
transcriptional regulator id=14625658 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
transcriptional regulator Tax=CSP1_6_Rokubacteria
Mg chelatase subunit ChlI
13_1_40cm_scaffold_1178_21
unknown

Not on your lists

18356..18550
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_scaffold_1178_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18677..20101
DNA (1425bp) protein (475aa)
group 1 glycosyl transferase id=14625816 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
group 1 glycosyl transferase Tax=CSP1_6_Rokubacteria
group 1 glycosyl transferase
13_1_40cm_scaffold_1178_23
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20149..20532)
DNA (384bp) protein (128aa)
Response regulator n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XNY9_SORCE
response regulator
Response regulator {ECO:0000313|EMBL:AGP32368.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellul
13_1_40cm_scaffold_1178_24
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20926..21651
DNA (726bp) protein (242aa)
membrane-associated phospholipid phosphatase (EC:3.1.3.27)
Membrane-associated phospholipid phosphatase n=2 Tax=Rhodopirellula baltica RepID=Q7UIY3_RHOBA
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:EKK00768.1}; TaxID=993517 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" sou
13_1_40cm_scaffold_1178_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22191..22976
DNA (786bp) protein (262aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1178_26
unknown

Not on your lists

23076..23573
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_scaffold_1178_27
unknown

Not on your lists

23649..23843
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 27 items

View Taxonomy