ggKbase home page

13_1_40cm_2_scaffold_410

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_410_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(3..176)
DNA (174bp) protein (58aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000255|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000255|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000255|HAMAP-Rule:
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=MRAY_SOLUE
13_1_40cm_2_scaffold_410_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(178..1614)
DNA (1437bp) protein (479aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKG6_KORVE
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
13_1_40cm_2_scaffold_410_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(1763..3397)
DNA (1635bp) protein (545aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000255|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000255|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000255|HAMAP-Rule
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=MURE_SOLUE
13_1_40cm_2_scaffold_410_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(3394..5448)
DNA (2055bp) protein (685aa)
peptidoglycan glycosyltransferase; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Peptidoglycan synthetase FtsI n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKG4_KORVE
peptidoglycan glycosyltransferase
13_1_40cm_2_scaffold_410_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5572..5961)
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKG3_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42637.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_2_scaffold_410_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(5991..6890)
DNA (900bp) protein (300aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-); K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000368859B
S-adenosyl-methyltransferase MraW
13_1_40cm_2_scaffold_410_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6994..7434)
DNA (441bp) protein (147aa)
Protein MraZ n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=MRAZ_ACIC5
putative MraZ protein; K03925 MraZ protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
MraZ protein
13_1_40cm_2_scaffold_410_8
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

8186..8389
DNA (204bp) protein (68aa)
Cold-shock DNA-binding protein family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QC1_SOLUE
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
cold-shock DNA-binding protein family protein
13_1_40cm_2_scaffold_410_9
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

8467..8775
DNA (309bp) protein (103aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Putative RNA-binding protein id=3531822 bin=GWB1_Deltaproteobacteria_rel_55_8 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
putative RNA-binding protein
13_1_40cm_2_scaffold_410_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

8831..9064
DNA (234bp) protein (78aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
13_1_40cm_2_scaffold_410_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

9061..9390
DNA (330bp) protein (110aa)
Tax=RBG_16_Acidobacteria_70_10_curated
13_1_40cm_2_scaffold_410_12
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

9482..10327
DNA (846bp) protein (282aa)
hypothetical protein; K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Delta-9 acyl-phospholipid desaturase (EC:1.14.19.-)
Uncharacterized protein n=1 Tax=Brassica rapa subsp. pekinensis RepID=M4E237_BRARP
13_1_40cm_2_scaffold_410_13
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(10502..10663)
DNA (162bp) protein (54aa)
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_1_40cm_2_scaffold_410_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(10728..11078)
DNA (351bp) protein (117aa)
RNA-binding protein, RNP-1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV44_KORVE
RNA-binding protein, RNP-1 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
RNA-binding protein, RNP-1
13_1_40cm_2_scaffold_410_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11158..12873)
DNA (1716bp) protein (572aa)
RNA polymerase sigma factor SigA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIK4_KORVE
sigma 38, RpoS
sigma 38, RpoS; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_410_16
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13619..14551
DNA (933bp) protein (311aa)
Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7X5_TERSS
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653, ECO:0000256|SAAS:SAAS00055095}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=1385369 spec
pyrroloquinoline quinone biosynthesis protein PqqB
13_1_40cm_2_scaffold_410_17
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14548..15291
DNA (744bp) protein (248aa)
coenzyme PQQ biosynthesis protein C (EC:1.3.3.11)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinolin
Pyrroloquinoline-quinone synthase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7X6_TERSS
13_1_40cm_2_scaffold_410_18
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

15310..15615
DNA (306bp) protein (102aa)
Coenzyme PQQ biosynthesis protein PqqD n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8P0B0_GRAMM
coenzyme PQQ biosynthesis protein PqqD
Coenzyme PQQ biosynthesis protein PqqD {ECO:0000313|EMBL:AEU36904.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis
13_1_40cm_2_scaffold_410_19
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

15692..16798
DNA (1107bp) protein (369aa)
Coenzyme PQQ synthesis protein E n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8P0B1_GRAMM
coenzyme PQQ biosynthesis protein E
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=682795 species="Bacteria; Acidobacteria; Ac
13_1_40cm_2_scaffold_410_20
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16854..17354)
DNA (501bp) protein (167aa)
Permease of the major facilitator superfamily n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FA06_SORC5
major facilitator transporter Tax=CG_Delta_01
major facilitator superfamily permease
Displaying 20 items

View Taxonomy