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13_1_40cm_4_scaffold_5859

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5859_1
unknown

Not on your lists

comp(1..219)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_4_scaffold_5859_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

768..1529
DNA (762bp) protein (254aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
hisS; histidyl-tRNA synthetase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Histidine--tRNA ligase id=3825046 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_4_scaffold_5859_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


1534..3255
DNA (1722bp) protein (574aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Aspartate--tRNA ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C339_SPHTD
aspartyl-tRNA synthetase
13_1_40cm_4_scaffold_5859_4
unknown

Not on your lists

comp(3265..3402)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_4_scaffold_5859_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3423..4547
DNA (1125bp) protein (375aa)
cysteine desulfurase NifS (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AA22_CARHZ
13_1_40cm_4_scaffold_5859_6
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

4544..5437
DNA (894bp) protein (298aa)
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=MNMA_ROSCS
13_1_40cm_4_scaffold_5859_7
Streptococcus sanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5434..5568
DNA (135bp) protein (45aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=888821 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcac
13_1_40cm_4_scaffold_5859_8
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

5569..6954
DNA (1386bp) protein (462aa)
Integral membrane protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJK8_9CHLR
transporter Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_5859_9
unknown

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7039..7131
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_5859_10
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7142..7396
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:AEU36024.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC B
hypothetical protein
13_1_40cm_4_scaffold_5859_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7630..8721
DNA (1092bp) protein (364aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L233_9BACT
13_1_40cm_4_scaffold_5859_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists


8718..10139
DNA (1422bp) protein (474aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBS2_9BACT
13_1_40cm_4_scaffold_5859_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

10171..11217
DNA (1047bp) protein (349aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_5859_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

11214..12707
DNA (1494bp) protein (498aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_5859_15
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

12712..13098
DNA (387bp) protein (129aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=383372 specie
Putative Holliday junction resolvase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQA7_ROSCS
Holliday junction resolvase YqgF
13_1_40cm_4_scaffold_5859_16
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

13179..14267
DNA (1089bp) protein (363aa)
hypothetical protein; K07082 UPF0755 protein Tax=CG_Anaero_03
hypothetical protein
atm:ANT_22320 hypothetical protein; K07082 UPF0755 protein id=1247063 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
13_1_40cm_4_scaffold_5859_17
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

14264..15907
DNA (1644bp) protein (548aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] id=12557000 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chorismate synthase (EC:4.2.3.5)
aroE; shikimate 5-dehydrogenase Tax=RBG_16_Chloroflexi_57_9_curated
13_1_40cm_4_scaffold_5859_18

Not on your lists

15904..16191
DNA (288bp) protein (96aa)
aroC; chorismate synthase (EC:4.2.3.5)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00037696CF
Marine sediment metagenome DNA, contig: S03H2_C01456 {ECO:0000313|EMBL:GAH31132.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
13_1_40cm_4_scaffold_5859_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16194..17783
DNA (1590bp) protein (530aa)
3-dehydroquinate synthase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JW86_HYPDA
3-dehydroquinate synthase
3-dehydroquinate synthase {ECO:0000313|EMBL:ADJ24965.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium d
13_1_40cm_4_scaffold_5859_20
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17780..18217
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0DZG5_9MICO
3-dehydroquinate dehydratase
13_1_40cm_4_scaffold_5859_21
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

18214..18771
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCQ1_THET1
translation elongation factor P; K02356 elongation factor P Tax=RBG_13_Chloroflexi_54_8_curated
translation elongation factor P
13_1_40cm_4_scaffold_5859_22
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

18797..19996
DNA (1200bp) protein (400aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 large subunit n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NN30_ROSCS
13_1_40cm_4_scaffold_5859_23
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

19983..20195
DNA (213bp) protein (71aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=SAR86 cluster bacterium SAR86E RepID=K6G4B2_9GAMM
Tax=BJP_IG2102_Ignavibacteriales_35_8
Displaying 23 items

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