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rifoxyb1_full_scaffold_126

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyb1_full_scaffold_126_1

Not on your lists

comp(215..1027)
DNA (813bp) protein (271aa)
Type II secretion system-like protein E n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKM8_NITGG
type II secretion system-like protein E
type II secretion system-like protein E
Marine sediment metagenome DNA, contig: S03H2_S23958 {ECO:0000313|EMBL:GAH77512.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifoxyb1_full_scaffold_126_2
unknown

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comp(1030..1380)
DNA (351bp) protein (117aa)

This feature has no annotations

rifoxyb1_full_scaffold_126_3
unknown

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1456..2163
DNA (708bp) protein (236aa)

This feature has no annotations

rifoxyb1_full_scaffold_126_4
unknown

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comp(2170..3771)
DNA (1602bp) protein (534aa)
Thermosome, chaperonin Cpn60/TCP-1 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MRK6_9EURY id=5103700 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Thermosome, chaperonin Cpn60/TCP-1 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MRK6_9EURY Tax=AR20
Thermosome, chaperonin Cpn60/TCP-1
Thermosome, chaperonin Cpn60/TCP-1
rifoxyb1_full_scaffold_126_5
zPERA2_38_36, Peregrinibacteria, Bacteria

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4029..4658
DNA (630bp) protein (210aa)
phosphoesterase PA-phosphatase-like protein id=5802818 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
Phosphoesterase PA-phosphatase related protein Tax=zPERA2_38_36
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_126_6
unknown

Not on your lists

comp(4677..4859)
DNA (183bp) protein (61aa)

This feature has no annotations

rifoxyb1_full_scaffold_126_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(5192..6175)
DNA (984bp) protein (328aa)
id=5045984 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=RBG_13_Woesearchaeota_36_6_curated
rifoxyb1_full_scaffold_126_8
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

comp(6261..6560)
DNA (300bp) protein (100aa)
transmembrane_regions Tax=CG_Pacearch_01
Uncharacterized conserved protein id=4649185 bin=GWA2_OP3_52_12 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_126_9
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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7073..7339
DNA (267bp) protein (89aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Met
DNA-directed RNA polymerase subunit H n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BAY6_METIK
DNA-directed RNA polymerase subunit H
DNA-directed RNA polymerase subunit H
rifoxyb1_full_scaffold_126_10
AR17, Woesearchaeaota, DPANN, Archaea

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7332..8816
DNA (1485bp) protein (495aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=AR17
DNA-directed RNA polymerase n=6 Tax=Thermococcus RepID=Q5JE32_PYRKO id=5103779 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase
DNA-directed RNA polymerase
rifoxyb1_full_scaffold_126_11

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8819..10621
DNA (1803bp) protein (601aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:KHO52598.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO52598.1};; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR9_METFV id=5103778 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase
DNA-directed RNA polymerase
rifoxyb1_full_scaffold_126_12
unknown

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10623..13250
DNA (2628bp) protein (876aa)
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR8_METFV Tax=AR20
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR8_METFV id=5103777 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase
DNA-directed RNA polymerase
rifoxyb1_full_scaffold_126_13
AR17, Woesearchaeaota, DPANN, Archaea

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13252..14403
DNA (1152bp) protein (384aa)
DNA-directed RNA polymerase subunit A''; K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] Tax=AR17
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit A''
DNA-directed RNA polymerase subunit A''
rifoxyb1_full_scaffold_126_14

Not on your lists

14411..14662
DNA (252bp) protein (84aa)
Marine sediment metagenome DNA, contig: S01H1_S20770 {ECO:0000313|EMBL:GAG19745.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
NEQ179 id=5799591 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30e
50S ribosomal protein L30e
rifoxyb1_full_scaffold_126_15

Not on your lists

14665..15084
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000374B7B8
N utilization substance protein A {ECO:0000313|EMBL:KHO46957.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_126_16
AR17, Woesearchaeaota, DPANN, Archaea

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15087..15524
DNA (438bp) protein (146aa)
30S ribosomal protein S12 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS12_METKA id=5103768 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=AR17
30S ribosomal protein S12
30S ribosomal protein S12
rifoxyb1_full_scaffold_126_17
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists


15521..16111
DNA (591bp) protein (197aa)
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 Tax=AR17
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 id=5048329 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S7
30S ribosomal protein S7
rifoxyb1_full_scaffold_126_18

Not on your lists

16300..18465
DNA (2166bp) protein (722aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003662C39
Elongation factor 2
Elongation factor 2
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifoxyb1_full_scaffold_126_19

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18538..19824
DNA (1287bp) protein (429aa)
Elongation factor 1-alpha n=7 Tax=Methanocaldococcaceae RepID=EF1A_METJA id=5103708 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Elongation factor 1-alpha
Elongation factor 1-alpha
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118};
rifoxyb1_full_scaffold_126_20
CG_Woesearch_03, Woesearchaeota, Archaea

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19852..20160
DNA (309bp) protein (103aa)
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 Tax=CG_Woesearch_03
30S ribosomal protein S10 id=5800771 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S10
30S ribosomal protein S10
rifoxyb1_full_scaffold_126_21
RBG_13_OP11_40_7b_curated, Microgenomates, Bacteria

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20227..20625
DNA (399bp) protein (133aa)
hypothetical protein Tax=RBG_13_OP11_40_7b_curated
id=2823526 bin=GWC1_CPR2_39_9 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_126_22
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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20677..21495
DNA (819bp) protein (273aa)
Methyltransferase type 11 n=1 Tax=Nostoc sp. PCC 7107 RepID=K9QFG5_9NOSO
type 11 methyltransferase Tax=RIFOXYC2_FULL_RIF01_39_67_curated
type 11 methyltransferase
type 11 methyltransferase
rifoxyb1_full_scaffold_126_23
unknown

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comp(21499..22686)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=3 Tax=Methanococcus maripaludis RepID=A4FZ02_METM5 id=5103793 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=3 Tax=Methanococcus maripaludis RepID=A4FZ02_METM5 Tax=AR20
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_126_24

Not on your lists

comp(22683..23873)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E3555
hypothetical protein
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF63071.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifoxyb1_full_scaffold_126_25

Not on your lists

comp(23894..25246)
DNA (1353bp) protein (451aa)
hypothetical protein
id=5045282 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54489.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifoxyb1_full_scaffold_126_26

Not on your lists

comp(25243..25935)
DNA (693bp) protein (231aa)
phosphonate-transporting ATPase; K02003 putative ABC transport system ATP-binding protein id=5045281 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54488.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
ABC transport system protein
ABC transport system protein
rifoxyb1_full_scaffold_126_27
unknown

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comp(25988..26614)
DNA (627bp) protein (209aa)

This feature has no annotations

rifoxyb1_full_scaffold_126_28
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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26755..27513
DNA (759bp) protein (253aa)
id=5045782 Tax=RBG_13_Pacearchaeota_36_9_curated
id=5045782 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifoxyb1_full_scaffold_126_29

Not on your lists

27497..27985
DNA (489bp) protein (163aa)
id=5045781 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46394.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifoxyb1_full_scaffold_126_30
CG_Woesearch_02, Woesearchaeota, Archaea

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28088..29077
DNA (990bp) protein (330aa)
phospholipase D/transphosphatidylase Tax=CG_Woesearch_02
phospholipase D/transphosphatidylase id=5047537 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
phospholipase D/transphosphatidylase
phospholipase D/transphosphatidylase
Displaying items 1-30 of 125 in total

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