ggKbase home page

rifcsphigho2_01_scaffold_55707

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_55707_1
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

511..945
DNA (435bp) protein (145aa)
UPI0003D1B16C related cluster n=1 Tax=unknown RepID=UPI0003D1B16C
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Meth
FKBP-type peptidyl-prolyl cis-trans isomerase
rifcsphigho2_01_scaffold_55707_2
unknown

Not on your lists

comp(1010..1576)
DNA (567bp) protein (189aa)

This feature has no annotations

rifcsphigho2_01_scaffold_55707_3
unknown

Not on your lists

comp(1611..1916)
DNA (306bp) protein (102aa)

This feature has no annotations

rifcsphigho2_01_scaffold_55707_4
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2230..2577)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00038150FD
transcription regulator AsnC; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA Tax=AR9
rifcsphigho2_01_scaffold_55707_5

Not on your lists

2689..3228
DNA (540bp) protein (180aa)
Marine sediment metagenome DNA, contig: S03H2_L00655 {ECO:0000313|EMBL:GAH40408.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Metal dependent phosphohydrolase id=3368550 bin=GWF2_Lentisphaerae_49_21 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
metal-dependent phosphohydrolase
rifcsphigho2_01_scaffold_55707_6
unknown

Not on your lists

3377..4087
DNA (711bp) protein (237aa)

This feature has no annotations

rifcsphigho2_01_scaffold_55707_7

Not on your lists

4084..5355
DNA (1272bp) protein (424aa)
Marine sediment metagenome DNA, contig: S01H1_S33861 {ECO:0000313|EMBL:GAG38627.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_01_scaffold_55707_8
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5352..5912)
DNA (561bp) protein (187aa)
3-methyladenine DNA glycosylase (EC:3.2.2.21)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=868595 sp
Putative 3-methyladenine DNA glycosylase n=2 Tax=Desulfotomaculum RepID=F6B416_DESCC
rifcsphigho2_01_scaffold_55707_9

Not on your lists

6021..6968
DNA (948bp) protein (316aa)
23S rRNA (uracil-5-)-methyltransferase id=5041726 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
23S rRNA (Uracil-5-)-methyltransferase {ECO:0000313|EMBL:KHO47978.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
23S rRNA (uracil-5-)-methyltransferase RumA
rifcsphigho2_01_scaffold_55707_10
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

7238..8269
DNA (1032bp) protein (344aa)
RCL1; RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4); K01974 RNA 3'-terminal phosphate cyclase [EC:6.5.1.4] Tax=GWA2_RIF03_38_11_curated
RNA 3'-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRQ9_9BACT
rifcsphigho2_01_scaffold_55707_11
unknown

Not on your lists

8274..9128
DNA (855bp) protein (285aa)

This feature has no annotations

rifcsphigho2_01_scaffold_55707_12
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(9118..10008)
DNA (891bp) protein (297aa)
rnz; ribonuclease Z (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] Tax=CG_Pacearch_04
RNAse Z n=1 Tax=nanoarchaeote Nst1 RepID=R1E5I6_9ARCH id=5103055 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNAse Z
rifcsphigho2_01_scaffold_55707_13

Not on your lists

10059..10622
DNA (564bp) protein (188aa)
tRNA-intron endonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EE73_9EURY id=5103054 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
tRNA-intron endonuclease
tRNA-intron endonuclease {ECO:0000313|EMBL:AJF62335.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
Displaying 13 items

View Taxonomy