ggKbase home page

rifcsphigho2_01_scaffold_1300

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_1300_1
Trichoderma virens, Trichoderma, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

1..351
DNA (351bp) protein (117aa)
Glycoside hydrolase family 18 protein {ECO:0000313|EMBL:EHK17396.1}; TaxID=413071 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypoc
rifcsphigho2_01_scaffold_1300_2
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(938..1330)
DNA (393bp) protein (131aa)
Putative hydrolase, MutT/nudix family protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TLG5_9BRAD
Tax=AR6
rifcsphigho2_01_scaffold_1300_3

Not on your lists

1456..1830
DNA (375bp) protein (125aa)
Marine sediment metagenome DNA, contig: S01H1_S02542 {ECO:0000313|EMBL:GAF96529.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_01_scaffold_1300_4
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(2019..2252)
DNA (234bp) protein (78aa)
Marine sediment metagenome DNA, contig: S06H3_S07796 Tax=CG_Pacearch_03
rifcsphigho2_01_scaffold_1300_5
Firmicutes bacterium CAG:345, Firmicutes, Bacteria

Not on your lists

comp(2249..2830)
DNA (582bp) protein (194aa)
Phosphatidylglycerophosphate synthase n=1 Tax=Firmicutes bacterium CAG:345 RepID=R6YZP0_9FIRM
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:CDD23727.1}; TaxID=1263020 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:345.;"
cdp-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
rifcsphigho2_01_scaffold_1300_6
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

2999..3523
DNA (525bp) protein (175aa)
Tax=CG_Woesearch_03
rifcsphigho2_01_scaffold_1300_7
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(3770..4357)
DNA (588bp) protein (196aa)
hypothetical protein Tax=CG_Pacearch_03
peptidase S54, rhomboid family protein; K07059 id=18248414 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
peptidase S54, rhomboid family protein
rifcsphigho2_01_scaffold_1300_8
unknown

Not on your lists

comp(4416..4781)
DNA (366bp) protein (122aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_9
unknown

Not on your lists

4953..6077
DNA (1125bp) protein (375aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_10
unknown

Not on your lists

6081..6233
DNA (153bp) protein (51aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_11
unknown

Not on your lists

comp(6259..7233)
DNA (975bp) protein (325aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_12
unknown

Not on your lists

7447..7593
DNA (147bp) protein (49aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_13
unknown

Not on your lists

7590..7733
DNA (144bp) protein (48aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_14

Not on your lists

7854..8048
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL77727.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsphigho2_01_scaffold_1300_15
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

8045..9454
DNA (1410bp) protein (470aa)
PIF1 helicase n=1 Tax=Beggiatoa alba B18LD RepID=I3CIC7_9GAMM
ATPase AAA {ECO:0000313|EMBL:KER10153.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;
TPR domain-containing protein
rifcsphigho2_01_scaffold_1300_16

Not on your lists

9451..11835
DNA (2385bp) protein (795aa)
Phage/plasmid primase, P4 family n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L3A1_9BACI id=5103823 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKN50451.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Phage/plasmid primase, P4 family
rifcsphigho2_01_scaffold_1300_17

Not on your lists

12477..13127
DNA (651bp) protein (217aa)
Probable DNA-invertase (Site-specific recombinase) n=1 Tax=uncultured archaeon RepID=D1JCJ2_9ARCH
Probable DNA-invertase (Site-specific recombinase) {ECO:0000313|EMBL:CBH39822.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
putative DNA-invertase (Site-specific recombinase)
rifcsphigho2_01_scaffold_1300_18
unknown

Not on your lists

13124..13834
DNA (711bp) protein (237aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_19
unknown

Not on your lists

13827..14138
DNA (312bp) protein (104aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_20
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(14201..15220)
DNA (1020bp) protein (340aa)
AsnC family transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA Tax=RBG_13_Pacearchaeota_36_9_curated
Transcriptional regulator
Transcriptional regulator id=5240686 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_1300_21
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15296..16636
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N1ZRD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ19582.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;
radical SAM protein
rifcsphigho2_01_scaffold_1300_22
unknown

Not on your lists

16626..17063
DNA (438bp) protein (146aa)

This feature has no annotations

rifcsphigho2_01_scaffold_1300_23
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17217..18284
DNA (1068bp) protein (356aa)
Cytosine-specific methyltransferase (EC:2.1.1.37)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417, ECO:0000313|EMBL:CBH20438.1}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417, ECO:0000313|EMBL:CBH20438.1};; TaxID=499177 species="Bacte
Cytosine-specific methyltransferase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PUV8_CLOSD
rifcsphigho2_01_scaffold_1300_24
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

Not on your lists

18253..19686
DNA (1434bp) protein (478aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PUV9_CLOSD
Restriction endonuclease {ECO:0000313|EMBL:KJJ85897.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
hypothetical protein
rifcsphigho2_01_scaffold_1300_25
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19674..20723
DNA (1050bp) protein (350aa)
Cytosine-specific methyltransferase n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9K5N1_9FIRM rbh
DNA-cytosine methyltransferase
Tax=BJP_IG2102_Clostridiales_34_350
rifcsphigho2_01_scaffold_1300_26
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

20736..21392
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036B24BC
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsphigho2_01_scaffold_1300_27
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21433..22818
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TS27_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM04412.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ac
rifcsphigho2_01_scaffold_1300_28
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22815..24224
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TS28_METAC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM04411.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ac
rifcsphigho2_01_scaffold_1300_29
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(24301..24459)
DNA (159bp) protein (53aa)
id=5102883 Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_1300_30
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(24461..25276)
DNA (816bp) protein (272aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
Displaying items 1-30 of 51 in total

View Taxonomy